MmuINT0042060 @ mm10
Intron Retention
Gene
ENSMUSG00000025532 | Crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
Coordinates
chr5:130034912-130037918:+
Coord C1 exon
chr5:130034912-130034948
Coord A exon
chr5:130034949-130037819
Coord C2 exon
chr5:130037820-130037918
Length
2871 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCTCTTGTGCCCCTTCCTAGGTG
3' ss Score
10.71
Exon sequences
Seq C1 exon
GAAGGATGCGAACGCAGCACTGCTCAGCAACTATGAG
Seq A exon
GTGAGGACCCCCACGCGGGCCATTGTGTTTTCCTCTCTGGTTTAGCTTTGCTTTTGAAGACGTTGGATTGGTTTTCTTTAGAAACGAGAGGGCAGGTGGCCCCTGATGGAGCTTGGAGTGATATGAGTTTGGTGAACTACACATGGTTCTTCAGGGAAGCGGGGAGGCTCTGGTTCACAATAGGTACTCTGCCGAAAATCCCAGAGTCTCTAGAGCAGGCAGATGTCCTAGCAGAAGGCTGCTGCTTTAGAGCGCAGTCCTGCTGTAAAAGTCTCCTATTAAATGCGTAGCTTCTTGATAATAACCATTCTCTACTTGTCTTTGATTCTCAAATGGCCTCAAAGACACTGATATCCTCATTTTGAGAACAAAAGTTGAGTTGACTCGCCATCGTGAATAATTTGGAAAGAATGAGCAGGTTCATAATTTGGGGGCTCATGGAAAAAGAGGAAGGAGATTGGTGAGAGGGGAGCTATTAGCATTTTACCTGCCTTCAACTGTGCCTGGGTCTAGTTTGCTAACAAAGCAGTCTAATAGGACAGCTCCAGATGTACAAGGGCCGGCTGATAAATTCTCTGTCAGTTTCCATGTCCCAAGGGAAAATCAGTCTTGGAGTCTTGGAGGAGGTCTAGGTTGGAGGAGGTCTAGGTCTCCATTGTCTGTGTGTATGTGTGCGTGTACTGTCGTGCACTTGCACACCGTATCCTCTGTGTCTGTGTTGTACTCTGTGTCTGTGCTGTATGCTTTGTGTGTGTGTTTGTAGAACTAATCCAGTCTGCTGTATTGCCTACTAAAGCTCCAGCCTGAGTGCCTGTGGCTTAGCCACCGCAGGGAAATGGTCACTGGGCAGAACATTGGCTCTTAGGAGCGTCTTTGTCCTGCTGGGCCTGTGCTCACTGTTTGGGTGTTTGTTTCACTGGGGAATCACTATGTTCATTGGGTCTCATGCTGCTGTTTTTCAAAGGTGGTGGAGCTGGGGGACTGTTGGGGCTGGGGGACTGTTGGGGCTGGGGACTCTTGGGGCTGTGGGACTCTTGGGGCTGGGGGACTCTTGGGCGGTGTTGCACATGTGTGCAGTAATGATCTAGGAGCTTGTATATTCCTCAGATCTCTGATAGAAACTCAGAAACAGGAGTAAAGTCCCACTTGTCTCCAGCCCAGCACTAATATGTCCCTGTCCATGTCTGTGTTCCTGTCTGTGTCCGTGTCTGTCTGTGTCTTTGTGGGAAAAGTTGACTTCTAAGAATCCATTGCATTTCCCTTCATTTTCCTTGTTATGCTGTAGGCCCAGGGATTTTGACATATTAAGTAAATGGTTTGCCACTGAACGATATCCTTGACTCTTTTTTTTTTTTTAAGATTTATTTATTTATTTTATCTATATAAGTACACTGTAGCTGTACAGATGGTTGTGAGCCTTCATGTCGTTGTTGGGAATTGAATTTTTGGACCTCTGCTCCCTCCATTTGGCCCCACTTGCTCAGTCCCTGCTCACTCCAGCCCAGAGATTTATTTGTTATTGTAAGTACACTGTTGCTATCTTCAGATGCTCCAGAAGAGGGCATCAGATCTCATTACAGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTAAACTCAGGACCTTCAAAAGAGCAGTCAGTGCTCTTACCTGCTGAGCCATCTCGCCAGCCCAGACTCTTATTTTTTTAATATCATTTATCTCATGCTCTTTCTGTTATAGAAAGAAATTGTTATACTAGACTTTTGTATTGAGCAAAGCCCCTAAAATATCTAGCTTGGGAAAATTTGCTTTCACATATTCATAAAGGCTTTGAGATAAAAGGATTAGTGATGTATGATTTTTAAAAAATAAATTAGCTGGGCGGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACTTAAAAAAAAAAAAAAAAAAACTAAAAAAAAAAAAGACATTTTATTTATTCTGTGTGATGTGTATCCCCATTCACATAGAGGACAGAGGACTTGTGGGAGTTGGTTTTCTCCATCATGTGGGTCCAGGAATGGAACTCAGGTTGCTATGTTTGATAGCAAGTGCTTTTACTGACTGAGTAGTCTTCACAGTTTGTTTTATTTATTTATTTATTTATTTATTTACTTATTTATTATATGTAAGTACACTGTTTTCAGACACTCCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGTTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTTGGTGCTCTTATTCACTGAGCCAACTCACCAGCCCCCACAGTTATATTTTAAGGGTCTTAGTTTTAATAATATTATTATATCAGAGAAGCAAAGAGACTCTGGTTTGTAATAGGTACTAGTATTGTGTTATTATAGATAATGACATTACATTATTATTGTTTTTAGTATGTCTGTGTGTGTGTGTGTGCATGTACCCATAGAGGCCATGGACCTCTGGAGTTGGAGTTACAGATATTGTGAGCCGACTGATGTGAGGTTCTCTGGAAGAGCAGACAGTGCTCTTAGACATCATCTCTGAGCCATCTTTCCAGTATTTTAAACAAATGGACGATTTCCACTGACTTAGCTAGGAGAGCATTGAAAAGCTGTTGCCTGGTTCTAGGACATAATACTTGCTCTAAACCAACTGTTGGGAAGCAGGCTGTGGAAAGAAAGTGGCCTTGCCTGACTGTCTGAAACTCTCGGAAGAGACACGTCTCTCAACTTTGCTGACCAGTGTCTCTTGTGCCCCTTCCTAG
Seq C2 exon
GTGTTCCAGTTACTAACGGATCTCAAAGAGCAGCGGAAGGAGAGTGGGAAGAACAAGCATAGCGCTGGGCAGCAGAACTTGAACGCCATCACCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025532:ENSMUST00000026608:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.614
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=PU(11.9=38.5)
A:
NA
C2:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types