RnoINT0041851 @ rn6
Intron Retention
Gene
ENSRNOG00000000901 | Crcp
Description
CGRP receptor component [Source:RGD Symbol;Acc:620753]
Coordinates
chr12:30148187-30151060:-
Coord C1 exon
chr12:30151024-30151060
Coord A exon
chr12:30148286-30151023
Coord C2 exon
chr12:30148187-30148285
Length
2738 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCTCCCATGGCCCTTCCTAGGTG
3' ss Score
7.39
Exon sequences
Seq C1 exon
GAAGGATGCGAACGCTGCCCTGCTCAGTAACTACGAG
Seq A exon
GTAAGGACCCCCATGCAGGCTGTTGTAATTTCTTCTTTTGGTTTAGTCTCTGCTTGTGAAAGATGTTGAATTAGTTTTCTTTAGAGATGAGAACTCATTTGAAGTTTCAGCTTAAACACAGGGCAGGCGGCCCCTGATGGATCTTGGGGTGATCTGAGTTTGGTGAACTACACATGGTTCTTCAGGGAAGCAGAGAAGCCCTGGTTCATAATAGGTACTCTCCTTCTGCAAATCCCAGAGTCTCTGGAGCAGACAGATGTTCTAGAAGGCTGCTGCTTTAGAGTACAGTCCTGCTGTAAAAGACTCTATTAAATGCATAGTCTCTTGGTAATAACCATTCTCTACTTCTCTTTGATTCTCAATGGCTTCAAAGACTCTGATATCCTCATTTTGAGAATAAGAGTTGGGGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCCAGCGAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAGAAAAAAGAAAAAAGAAAAAAGAGAATAAGAGTTGAGTTGACTCACCATTGTGAAAGAATGAGCAATAATTTGAGGGCAGATGGAAAGAGGAAGGAGATCTGCGAGAAGGGGTATTAGCATTTTATCTGCCTTCAACTTTGCCTGGGTCTAGTTTGCTGCTAGCAAAGCAGTCTAATAGGACAGCTCCAGGAGTAGAAGGGCCTGCTGATAAATTCTGTCACTTTCCATGTCCCAGGGAGGAGGAGATCTAGGTCTCCATTTTTTACTGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCGCCCACGTGTGTGTGTGCTGTGTACTCTGTGTGTCTGTGTACTCTGTGTGACTAATTCAGTCTGCTGTATTGCTTACTAAAGATTCAGTCTGAGTGCTTGTGGCTTAGCCACAGGAAGGAATGTTCATTTGTCAAAACATTAGCTTTTAAGAGCTTCTCTGTCCTGCTTGGCCCTTGCTTAGTGTTTAGGTGTTTGTTTCACTGGGGAAACATTATGTTCACTGGGTCTCATGCTACTGTTTTTCAAAGGTGGTGGGGCTGGAGGACTATTGGGCGGTGTTGCACAAATGTGCAGTAATGGACTATGAGCTTGTATTTTCCTCCGATCTCTGATCAAAACCTCAGAAACAGGAACACTTGCCTCCAACCCAGCACTAACGTGTCTGTCTATCTGTCTCTGTCTGTGCCTGTGTCTTTGTCTGTCTATGTCTGTCTGTACCTGTGTCTGTGTCTGTGTCTGTGTCTGTCTGTGCCTGTGTCTTTGTCTGTCTATGTCTGTCTGTACCTGTGTCTGTGTCTGTGTCTGTGTCTGTCTGTGCCTGTGTCTTTGTCTGTCTATGTCTGTCTGTACCTGTGTCTGTGTCTGTGTCTGTGTCTGTCTGTGCCTGTGTCTTTGTCTGTCTATGTCTGTCTGTACCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTCTGTGACTGTGTCTGTGTCTGTCTTTGTCTGTCTGTGTCTGTCTGTGCCTGTGTCTGTGTCTGTCTGTGTCTGTGTCAGGACCCAGGGATTTTGACATTAAGCAAATGGTTTGCCACTGAGCTTTATCCTTGGCTCTTATTTTTTCAATGCTGTGTTACATCATTTGTCTCATGTTCTTTCTGTTATCGAAAGAAATTGTTATACTAGACTGTGTATTAAGCAAAGCCCCTTTAAAATGTTTAGCTTGGGAAAATTTGCTTTCAAATACTCATAAAGGGTTTGACATAAAAGGACTAGTGATATATGATTTAAAAAATTAAATTACATTTTATTTATTCTGTGTGATGTGTATCCCCATTCACATGGAAGACAGAGGACTTGTGGGAATTGGTTTTCTCCTTCTAGCATGTGGGTCCAGGGATCGAACTCAGGTTGCTATGTTTGATAGCAAGTGCTTTTACAGGCTGAGCCTGTGATACATATTTTTAAGTAGTCTTCACAGTTATTTCTTAAGGGTCTTATTTTTTTTTAAAGATTTATTTATTTATTCCGTGTATGTGAGTACACTGTCACTGTCTTTGGACAGACCAGAAAAGGGCATCGGATCCTATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCAAGGGTCTTATTTTTAATAATATTATTATATTAATAATAGTATATTTTATATATTATAATAATATGGTTCTTCAGAGAAGCAGGGGAGGCTCTGGTTTATAGTAGGTACTAGTAATATGTTGTTGTAGATAATAATATTACATTATTATTTTTATATATCTGTATGTGTATGCACATGTACCCGTAGAAGCCATGGATCCTCTGGGGTTGGAGTTACAGATGGTTGTGAGTAGACTGATTTGCAGGTCCTCTGTAAGAGCAGAAAGCACTCTTAGCCATGTCTGAACCATCTTCCCTGTATTTTAAATAAATGGACGATTTGGACTGACTTAGCTGAGAGCGTCTAAAAGATGTTGTGTGGTTCTAGGATATAATCCTGGGACATAATGCTCTAGACCAGCTGTTGGGAAGCAGGCTGTGGAAAGGAAATGGCCTTACCTGACTGTCTTAAACCCTTGGAAGAGAGACATCTCTCGACTTTACTGACCGATATCTCCCATGGCCCTTCCTAG
Seq C2 exon
GTGTTCCAGTTACTGACAGACCTCAAAGAGCAGCGGAAGGAGAGCGGGAAGAACAAGCATAGCGCCGGGCAGCAGAACTTGAACGCCATCACCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000901:ENSRNOT00000001202:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.409
Domain overlap (PFAM):
C1:
PF061336=DUF964=FE(17.1=100),PF117613=CbiG_mid=FE(17.9=100),PF0387411=RNA_pol_Rpb4=PU(11.6=38.5)
A:
NA
C2:
PF061336=DUF964=FE(45.7=100),PF117613=CbiG_mid=FE(47.8=100),PF0387411=RNA_pol_Rpb4=FE(74.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]