HsaINT0041267 @ hg38
Intron Retention
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:HGNC:17888]
Coordinates
chr7:66127704-66130842:+
Coord C1 exon
chr7:66127704-66127740
Coord A exon
chr7:66127741-66130743
Coord C2 exon
chr7:66130744-66130842
Length
3003 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TTTTTTGTATCTCCTCCTAGGTA
3' ss Score
11.36
Exon sequences
Seq C1 exon
GAAGGATGCCAATTCTGCGCTTCTCAGTAACTACGAG
Seq A exon
GTAAATTGGATTGTTACATTTTCCTCTCTGATAGTTTGCCCTTCGCTCCTGAGATTGTTAAATTGATTTTGGTTAGAAATGACTGAATTCAGGCTGGGTGCAGTGGTTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCTGGATCACTTGAGGTCAGGAGTTCAAAACTAGCCTGGCCAACATGGTGAAACCCAGTCTCTACTAAAAAATACAAAAATTAGCTGGGTGTGGTGGCACATGCCTGTAGTCCCAGCTACTTCGGATCCCAGCTGAGGCAGGAGGGTCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAACTAAGATGTGCCACTGCACTCCAGCCTGGGCAATAGACCAAGGCTCTGTCTCAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAAAGAAAAAAGAAATGACTGAATTTATTTGGATTTTCCACTTTAAAATAAGACATGGCAACATCTGGTGGACCTTGGAATAGTGTAAGCTTGACACGTTATACATAGTACTTCAGGAAAGCTGGGAAGACTCTATTTTAGAGGGGGCAACCTTCTCTAAATCTCAACGATTCCAAATCATCATTTGGGATGTAGTCATAGGATAGAAGCATCTATTTTAAGGCTGTTTCTGTCTGCAGAATTTCCCATTAAAATTTTTATGATTTTTCCTAATTATCACCTTTGATATATTTATATATTTATAATGCTTTTATACATTGCAAATAGTCTTATGGGTATTAACATCCTTATTTTGAAAGTGAGTTTAAGCCGAGCACAGTGGCTCATGCCCATAATCCCAGCACTTTGGAAGGCCAAGGCCAGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCCAACATGGTGAAACCCCATCCCTACTTAAAAAATAAAAAAAGAGAGTGAGTTTAGTTGACTCACCTTTCTGAATAGTAGAAATTAAGAAATGTAGAATTTTTTGGGCTTAGGGTGGGATTGCTGGAGAAAGGAAAAGAAGGAAAAAGGTTGGTAAGAGAGGAGATATTCCAGCATTTTTGCCTCCTATTTGGCACTAGCAAAACCATCTGATAGGCTCACTCCAGGTGTAGAAAGAACCATTTATACCTTGACTGTGAATTTTCCATGTGCTAGAGTCTAAACTCAGAAAGACTCAGGAGGTCTAGAAGGTAGTAGGTTAAGTGCAGTGTCTCACGCCTGTAATCTCAGCACTTGGGAAGGCCAAGGAGAGAAGATTGCTTGAGGCTATGAGTTAGAGCTCAGCCTGGGAAACCTAGCAAGACCCCCAGCTCTTAAAAAAATAAATTAGCGGCCGGGCGCGGTGTCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCAAGAACATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCAAGGTGGCGGGCGCCTGTAATCCCAGCTGCTCGGGAGGCTCAGGCAGGAGAATGGCGTGAACCCGGGGGGTGGAGCCTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAAATAAAAATAAATAAATTAGCTGGACATGGTAGCAAACACCTACTATGGTCCTAGCTACTTGGAAGGCAGAGGGGAGGTTCGCTTGAGCCCAGGAGTTTGAGGTTACAGTGATGACCACTGTACTCCAGTCTGGGAGACAGCTTTTGAGACCGTGTCCCCAAAAAAAAGCTCCCAGAGTGTAAGACAGCAAAAAGAAAGAAAGAAACCTACCCCCTTGTGGTGCTCCCCTCCCCCGCCCCACAAAAAAGAAGGTAGTAGAATAAACAGAGTTGGCCATATTCTTTCCTCTCTAAAGGCTCAGTCTTAAGTGGTTGCAGCTTAGAACAGGAAGGAAATGGTTGAATGGTTTTTGGCCAAGCCTTTGGCTTTTAGGAGCCTCCTTGTCCAGTTTGGACTTTGCTAGGTGTTTGGGTGTTTTATCCATTGGGGAAACATTGCATTCATTGATCTCATGCCACTATTTCTGAAAGGACCAGCAGATGAGAGGGGTCGTATTGTATCTGGTGATGGTGTGTGAGCCTGCATTTTCTTCACTTCTGTGGTAGAATCTCTAAAACAGGAATGAGACTAAGATTCCCCCCTGCCCCCAGCACTAATACATGTATGTTTTATCCTTGTGGGAAAGTTTGCTTCTAAAGATCCATAGCATTTTTTCCTTTCTTTTTTGGGGGGTAAACTCTGTCTTATCACTTGCCTCAAAATTTTTCTTTTCCAGAAAGAAATTATTATATTAGATTTTTATACTAGAGAAGCAGGATTCTTTTTTTTTTTTTTTTTTTTTTTTTTCAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGCACCATCCAGGCTCACTGCAACCTCTGCCTCCCGGATTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGCCGCCACCATGTCCAGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATCTCCTGACCTCATGAACCGCCCACCTCACCCTCCCTAAGTGCTGGGATTACAGGCGTGAGCCATCATGCCTGGACCCAGAATTCTTTTTTAACAAAATATTTGCTTTAAGAAAATCTGCTTTCAAATAGTATATTTTTGAGATCAGATTAGTGATGTACATATTGATAGGAAATATTTGAAATATTTTAAGTAAATTAATGAATTTGAATTATTTGGCTTATATAAAAGAACATTTTTTAAAAATGTAATATGCCTCTGGGACTCATATTTGCTCAAATCCAAGAGTTGGAAGCTGGGTGATGGGCGGGTGAAAGGAAGTACTATACTTTCCTGTTTATCCTTCAAAACCACTGACCTTGGATAGATATATTTCTCAAATTTATTCATAAACGTCTTTTTTGTATCTCCTCCTAG
Seq C2 exon
GTATTTCAGTTACTAACTGATCTGAAAGAGCAGCGTAAAGAAAGTGGAAAGAATAAACACAGCTCTGGGCAACAGAACTTGAACACTATCACCTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258:ENST00000395326:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=PU(11.5=76.9)
A:
NA
C2:
PF0387411=RNA_pol_Rpb4=FE(27.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains