HsaINT0042237 @ hg38
Intron Retention
Gene
ENSG00000164796 | CSMD3
Description
CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
Coordinates
chr8:112506691-112517225:-
Coord C1 exon
chr8:112517034-112517225
Coord A exon
chr8:112506830-112517033
Coord C2 exon
chr8:112506691-112506829
Length
10204 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGA
5' ss Score
6.99
3' ss Seq
TTTGTTTGTTTAAATTAAAGCAC
3' ss Score
3.8
Exon sequences
Seq C1 exon
GTTCTGTTGCCACTGCGTGTCGTGACCCAGGGGTCCCCATGAATGGGACTCGAAATGGGGATGGAAGAGAACCTGGGGACACTGTTGTTTTTCAATGTGACCCAGGATATGAACTTCAAGGAGAGGAAAGAATAACCTGCATTCAGGTAGAAAATCGGTACTTCTGGCAGCCCAGCCCACCAGTCTGTATAG
Seq A exon
GTATGAATTAAAGAACAATTAAAATTTTATATAAACATAAAACAATGGTTAAAAACTGGTATTGTTCTTAAGAACCATATTCTAGACTAGATTCTATATGAGAGTCTAAGATTTCAGAGGATTATTAACCTCCGCAGAATGTACAAAATTGTAAAATGATTATTATTTTTCCATGGGGTAAAGGCTGATGATTTCATTAATTTTTTCAATGCTTCTAAGATTCTAAAACAGTTATGAATCAAAGCTCTTGGAAAATTATATCACCCTTTATTTACTATGTAGCCATAGTTATCCATTGCTTAAAGAGTGGATTCAGACCCCATATTAAAATGGGTCATATTGATCTTGTCTCTAAAATGGTTATTTCATTTAAGAAAGAAAATATTGTCAGAACCTATGTCAGAATTTCCAAGCTTTGTCTTTCTATTTAATTCATGTAATCCAAAGGAATATTGGTTTTTATTTGGAAGATCTAAGAAGCTGTAGCGCCTGGATCATACTTCCAGCTGTCTTTTGTCTCCGTGCTCTGTTATTGAATCTCCAAGTTAGACTCTAGAAAATTAAAACAAATTATGATTTGGTCTGAGAAAGACTTAGAGGAATGTCCCGCTTTTGGAATAAAAATAGTTAGAAAATATGCTATATCATTAAACTAGTTTAATCTTAAACTTTTTTGTTCTGTTCAGGTGCTTTAGTATTTGTGTCATCTTGAATTTACGACACATTTTGAACAAACTATGTTTTCTCTACTGAAAATTTTATTTATTTACATACTCTCTCTTACCACACTGTAAGCAACTTGGGAGAAGATTCCATAACTTGTTCATCATTGTGTTTCTTATAGCATTTGGTACATGCAAATGTATCAAGTTTTAGAGGGAGAATCTTATTTTTGTTCACTTACACCTAACCCATAAACTTCACAGTGACTTATTTTGAAAGTCCCATGGAAATAGGAAAAGAGTGTTAGTTCTTCAGTTAGAAGTGAACAAACTCAATCAATTATTCAGATTTATTTTACCCCATCTTGTAACTCCCACACAAAATTACAAAATCAAATTCATTAGTCATTAACTGTGTCTCAGGCACTGTTCTAAACAGTGGGAAATTAGCAATAAAACAAGACAGAAAAGTACTCTGTTCCTATGAACTTACTTTGCAGTGAAATAATAAAAAAAAAAGTTTTACAACACATTTTCTCTATTTTATAAAGTTGGATTTAAGAAAACACTAAATGCACCAAACAACATAAAAAGGCCCAAACCAGCCAGGCAGTAGACGGACAGTTCTAGATCTCTGCTGTAAAAAATAAGACAAATGACAAAGAAGTAAATTTATTAGAGACCCTTTTATAAAGCATGAAATAATGGCATCACTTGAACAGTTCAGATTTAGCTGTATCTCCCATTACACTATTTCTATTCACACCCATATTGTTCTTCATGTACCACTGCAAGATTCTAAATCAACAAACATCAATTAATTTACATTTACTGTAAGTGCACTCATACGATCCGGGGAAACAACTGTTAAGAAATGTTTGCAAAGAAAGAGATTGAAATAATGTTTCGTATCTGTTTCAAAATTTTCAAGTTTGTTTACTACTCAATTAACCAAAAAATTTTCAACTAAATTAAAACTTCTTATTCTAATTAATTGGAATTTGACCACATATCTCATGAAGAGCATATTTATGTAAAGAATAAATTATAAAACACCAAAATCTTACTGTAGAACTTCTTGCTTTATTGTGATTCTTAGATTTGGCTAAAGGATGTTGCTTATTAGAATTACCAGAAGGGCCAACTGATGACAATTGTTTTTACATAAAATCCTAAAATATTAAATGGCTTATACAAAAATTCTAGATAACACTAAAATCCAAGGTGCAAAAGATGAAAAACTTCTGAGATCTGCTATTACAAATTTCCATTTTTAGACAAGAATATGCTTTAGCTAGCAAGTCCTATTCTAGAAAAAAAAAAGCTGAGTACTAAGTCTTACTTAAGTTAAGCAGGTTGTGTGAGGTTTTTCTATAGATAATGATACTGTGTATTATTTTTGGTAGGAAAAGATAGCTTGAGGGGAAGATATAAATTAGAGCTTCTCTGGGGAAGAAAATAACCTTAAAAAAAAAGTCTGAAAAATTGCTAAGGCTGCAGAATGCTTGACCTCTAAAACTGATAAGAAAGAACTTCATGATTGGAAATACCATGCCAAAGATTAAACCCTGAACTTCTTAGAAACTCCATAATTCTATGTCTAAGACCCCGAAGCATAAAGCGTTTTGCTTGCTTGCATATAGAAACAGTCAGTCTTATAGCAAGTACCAAACAGAAGGACGTCATCTTTAAGAGAGTTAATAAAATTCATTCCAACAAAATTGACAGCGTGTAAATTACTTTGACATTGCCCCCGGGAAAGTAGAAGCATTCAATATGAAGGTAAATAGGAAAGACATTAATGTGAGTGGGCTTTTGAGATAGAAAGAAGACACAAATAAAATTGAATTTGAGAAACAAATTAAGAAGATTTTAAAATAGTTATCAATAGTTGATGCCCATATAACTGCCTCAGAAAACACTGCATTCAGAGCAAATTACTGAAAACTTAATTCATGAATCCCTGACTTATATTTTGAATGCTTTATGGTTAGATGGGCAAAAATAGAGATGCATTTCTAAATGCTATTTAAAGTTGAGTATATTTAAAGATAATTTTCTTTACTCACTAAGAGTTTGGGATTTACAAACGTCAGATAATGTCTCTGCTTTTCTTGTTGGCTTTCGTAGGTTTTCAAAATCAACCACAGCATTGAAATATATTGAGAAATCTTTGATAAATAATTTAAATAGATGCACACCTGTGTTCCCAGCTACTCAGGAGGCTAAGATGGGAGGATTGCTTGAGCCCAGGAGTTTGAGATGAGACTGGGCAACATAGTAAGACCTTGTCTCTAGAAGAAAAACAATAATTTAAGTAATAGAATAAAAATCATTTTAGAGAATCTTATATCTAAATAATAGATACTTTACTATATGTAATAAATTTTCTTAAATATTTTGTGATAAGGAATATACATATATAACATCTACATGTATGTATGCATCTCTATACTGTTTCTAACAATAAAAAAGACCAATGTTCCTTCTAAAAAATAAGGACAATTGAAACAAAATTACTCCCCTACCCTCTCCAAAATTACACATAATCCAAGTGGAAAAAAATCACAAAGAACATTTTGCTATCATTCTGGTCTTTTTTGCATATATACATACATATAAGCATACCTCATTTTATTACAGTTCACTTTATTGCATGCCACAGATATTACGTTTTTTTACAAATTGAAGGTTTTTGTCAACCCTGTGCCAAGCAAGTCCTAATAGACTTTTTTTCCAATGGCATCTGCTCACTTCATGTCCCTGTATTATATTTTGGTAATTCTCACAATATTTCAAACTTTTTCATTGCTATTTTGTTGTTATTGTGATCTGTGATCAGTGATCTTTTATGTTACTATTGTAATTGTTTTGGGGTGCCACAAACAAATGCCCATGTAGGACAGTGAACTTAACCAATAAATATGTGTTTTGAGTGCTCCCCTAACTGACTGTTCCTCCATGTCTCTCTCTTTCCTTGGGCCTACCTATTCTCTGATACACAGTATTAAAATTAGACCAATGGCCTCTGAGCATTCAAGTGAAAGGAAGAGTTGCACATCTGTCACTGTAAATTAAAAGCTTGAAATGATGAAGCTTAGTGAGGAAGGCCAGTTGAAAGCCCAAATAGGCTGATAGCTAGGCCTCTTGCACCAAATAGTTACCCATGTTCTGAATGCAAAAGTAAAATTCTTGACAGAAATTGAAAATTCTACTCTAGTGAACACAGGAATGATAAGAAAACAAAACAGCTTTGTTGCAGATATGAAGCAAATCAGTGGTCTGAATAGAAGATCAAACCAGCCACAACATTCCCATAAGCCAAAACCTAATCCAAAGGAAGGCCCTAACTCTTTAATTCTATAAAGACATAGATGGGTGAAAAAGCTGCAGAAGAAAACTTTGAAGCTTGCATAGGTTGATTTGTAAGGTTTAAGGAAAGAAGCTATCTCTGTAACATTAAAGTGGAACGTGAATATGTAGGTACTGAAGGAGAAGCTGCAGCCAGTTACCCAGAAGATCTAGCTAAGATCACTGATGAAAGTGGCTACATTAAAAACAGTTTTCAATGTAGATGAAACAGCATTCTATTCGAATAGTGTCATCTAGAACTTTCATTGCTAGAGAGGAGAAATCAATGTCTGGCTTCAAAGCTTCAAAGGACAGGCTGACTCTCTTATAGGGGCTAATGCAGCTGGTGACTTTAAAATAAAACCAGTGCTCATTTACCATTCTGAAAATCTTAGGCCTGTTAAGAATTATACCTGTGATCTATAAATGGAACAATTAAGCTTGGATAACGGCACATCTGTTTACACTATGGTTTACTGAATATTTTAAGCCCATTGTTGAGACCTACTGTTCAGAAAAAAAGATGATTTTCAAAATATCACTGCTCGTTGAAAATGTACCCATTGCTTGTTCAACTGCTTGTTGAAAATGTACAAATGAGCTTTTGTTCACCCAAAAGCTCTAATGGAGATATGCAAAGAGATTAATGTTTTTATGCCAATAACACAACATCCATTTTGCAGCCCATGGATCAAGGAGTAATTTTGAATTTTAAAGTGGCATTATTTAAGAAATATATTTTACAATACTATAGCTGCCAAAGACAGTGATTTATCTGATGCATCTGAGCAAAGTAAATTGAAAACCTTCTGGAAAGAATTTACAATTTTAGATGCCATTAAGAACATTTGTGATTCATGAGAGGCAGAAGAAATATCAATATTATCAGGAGTTTGGCAGAAGTTGATTCTAACCCTCATGGATGACTGTGATGAGGGGGTGTTTAAGACTTCAGTGGAAGAAGAAACTGCAGATGTGGTAGAAGTAGCAGGAGAACTAGAATCATAAGTGGAGCCTGAATATGGGACAGGATTGCTACAATCTCATGATAAAACTTGAACGAATGAGGAGTTGCTTCTTATGGATGGGAAAAGAAAGTGATTTGTTGAGATGGAATCCACTTCTGGTAAAGATGCTGTGAACATTGTTGAAATGACAACAAAGAACTTCAAATATTACATAACTTAGTTGATAAAAGCAGAGGCAGAATTTGAGAGGAGTGTCTCCAAGAAGTTCTACTGTGGGTAAATGCAATCAAATAGCATCACATGCTACGCGGAAATCCAGTACTACGGCAGACTTCTTTATTATCTTATTTTACGAAAATGCCACCCCGGGCGTGGTGGCTCACGTCTGTAATCCCAGCACTTTGGGAGGCCGAGACGAGCGGATCACAAGGTCAGGAAATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAACAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGAAGGAGAATGGCGTGAACCCGGGAGACGGAGCTTGCAGTCAGCTGAGATCTCGCCACTGCACTCCAGCCTAGGCAACAGAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAATGCCACAGCTACCCCAGATTTCAACAACCACCACCCTGATCAGTTAGCAGCCATCAACATCTAGGCAAGACCCTCCTCCACTAGCAAAAGGATCATGACTCACTGAAGACTCAGATGACCATTAGCATTTTTTTAGCAATAAAGTATTTTTAATTACGTTAGGTACATTTTTTAGACACAATGCTGTTATGCACTTAATAGACTACAAGATAGTGTAAACATAACTTTTATATGGACTTGGAAACCAAAAAGGTTTTGTGACTCACTTTATTGCTATATTTGGTTTATTGTGGGGGTCTGAAACTGAAACTGCAATATCCCTAACGTATGCCTGTATACGCATTTGCTATTATACTTTTTTTCATATTCACATATTATTTTCAGAGCCCCAAAGGTAAAATATGTTGCTATTTTTATTAAAACACATAGCTACAAATTAGATTGTGCATCCATCTCTACAGTCATCTTCACTATTTACATAATCAAATATAAAGAACCACTAGCAATTCAACAAACGTTATGAAATATATAGTATGCACTGAATTCTAGGAATAAATAAAATATAGACAGAGTGTCTAGCTTACATATTAGTGATGAGTGCTGACACCTGAATGGAATATTAAATAAAATACAGTCAATACAGTCAAAGAAATGACCGAGATGGGCAGAGGTTACTATGGATACCAGAGGGTTAATATTACATATTAGTAATGAATACTGACACCTGAGTGGAATATTAAAAACAAATACAATAAGAGAAGCAACAGAGATTGGCAGAGGTTACTATGGATACCATAATGGTTTAGAGAGAGATGAAGTAGTGCCCATTCTGGGGTCTACAGGAAAACTTCCTGGAGGCAGTGATGAATCTAAAAACATAAGTTAGAGTTATATAAATGTAGAAGGGAAACAGGCATTTCAGGAAGAAGAAACAAAATGAGTAAAGTCATGGAAGAACAAGGAAATATAAGCAGTATGATAATATTTGAGTATAATTTATGTGTATACACTGATGGTTGATGAAACTGGAAAGACTGTATGGGTCAGATCATGAAGGCTGTATGGGAATTGGGACATTATATTTTAGACAATGTGAAACAGTTGCAGAATTTTATGCATATACATAGTACGATTAGATGTTTTCACTGAGGAAAAAAATGGGGAATAATCGTTTCAATTATCAATTGTAATAATTCGAGAAAGAGAGGAGTTAGACCTATTGGTAGTAGGCAAGAAAAGAAGGACCGGTTGAAAATAGCTACAGGGTGGAGTCCTGGCAGGGCTTCTTGATAGATTGGATATAAGGATGCAGTGAAAAAAAGAGAAGACTCTTAGGCCTCTAGCTTGGGACTACAGGTGGATGGTATGCTCATCTAACAATTTAGGAACCTAGGAAAAGAAGCCAATTTAATTTGAGGTTGAGTATTTAGGCTATTCTATATTTGATGTACCAATAGACTACAGAGAGAGATATTCAGTAAACACTCTGGCATATGGTTTAGAGTTCAGCCAAGAAATCTGTAGGAGGAGATAGGGAAAGGTGTTATCAGGGTATAAAAATTAGAAGATAAAAATCATAAGTTTACATATGGTCAACAAGGAAAAATGTACCAGTAGAAATTAAGAGAACCATGTAAGGAACTTAGGAGATCACCAAAGTTATAAGGAGATGTAAAGGAAGAAGTGTATGATAATAAGACTGAAGTCTGTATAAAGACACTAGAAGAAAACCCCAGAAACACTGGCTTCTAAGATTCCAGAAACTAGGATGGTGAATTTAAGATAAAGATCAACAATTAAGAATGACTACAGATATGAAGAGAAAGATAAAGGCAGCAAAGTCTTCATTATTATTATAAATGCAGAAGTCACTTAAGTATAAGCTAAGAAATGTTTGTATTGGGAGCTAGCTAAGAAATGTTTGTATTGGGGCAATGGTTGAGAAGAGAATGAGAGGTAGAAAGGACCATATAAAGACATCTAGAGGCCAAGCATGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTTGAGGTGGGCCCATCACTTGAGCTCAGGAGTTCAAGACCAGCCTGGGCAACATGGCAAAACTCTGTCTCTCCAAAAATACAAAGATTAGCTGCATGTGGCAGCACACCTCTGTAGTCCCAGTTACTGGGGAGGCTGAGGTGGGAGGATCACCTGAGCCTGGGAGGTCAAGGCTGCAGTGAGCTGTGGTCGTGCCACTGCACTCCAGCAGCCTGGGCCACAGAGTGAGACCCTGTATCGAAAAAAAAAAAAAAAAAGACATCTAATCTAGACTCTCTAAGTAATAGAAAGGTTATTGTGTCTCTCTAAATGTAATTTAAAATAAAAATAACTTTAAACCTTACGATAATTTTTGTCATGTTGAATACTTTGGCACTTTTCTTTGAGAAACAACATAAGAAACATTTTCCTCCTTTAGTTTTCTGCTTTGTTGGACTTGTTAGTCATCTTAATCTGTCCCATAGGTACATACAGCACAGGGGTGCAGAAAGAGACAGTGAGAGTAGATGTCCCCTTCAAAAAGCTTAGTTATGCCAAATTAAAAAAAAAATCAGAATTTAGTAAGAAGAGACTTTGATTCAGACAGGATTATTGCAAGGAGCAGGGAAGGGACTATTGCAACAGGGAATACTAAGGCTGTAAGATCTGCACCTATCTCAGGAGTTAGATGAAAAGGCTTTTTTTTCTTTTTTTAGAGAAGGCTAAACAAAGCTAGAGAGAACCAGGTACGAAGTCAGAGGAAAGGGCAGCCTGATTGAATAGTAGATGAGAGAATGTTGTGCTCTGAATCCAACCTATTCTCCGGAAATATCCTGTGCTGTCTTAAAGCTGAGAGTGGGACAAAGTTCAGGAGCCTAGAATAAGGAGGGAAACGTAATCAAAGTTTGTTTCACAAGAATTTTATTCAGATTAATCAGTGAGCCAAGCAGTTCAGCTAGAAGCAAAGAATCGGAACTGGTAGGGTCTGTGTCTGGTCTTGCCATAAACAAGAGGGTGACAAAGACAGCTTATCTAGGTCATGATAAGTGAGTCTTATCTAAGTTATATGGGGCAGGGTGTTTCCTTATAGTAAACAATTTTCTGTTAAAAAAAGTGAAAGTAAGTAGGTCATAGGGAAGTTTGTTTTATTTTTAAGATGAAAGAAACCTGAGCGTGTTTGTGGACAAAGTGGAGAAAGCCAGGAAAAGTAAGGGAGACAAATAATTGAACAAGTGTTTTGGATAAGGGAGAGGGATTATGTGACCAGGTTGACGGTGATATCTTGATTAGGAGGGACTCTATCCTGGGATTGTAAAGAGAAATATTCAGGAGGCATTTAAGCTTGGAGATGGAGGACTACAGAACATCGAAGCAGTTTATGTCTAATCATTTTATAATGTACCACAAAAACATATAAGCGACAGGAAAGTAGTGGTGAATATATTAAGTCTGAGCAACTAGATATTCTCAATGCAGTAAGAGCTGAGACAATTTTCTGAGAGTGACTCAGGTACTGAGACAAGAGTAGCAGAGGTGCATGGAGGAAGGCAGTACCAGACAAAAGACAATGGAAAAATTACCAAACCGTAGTGATGATATTACATATCTCAACTCATGCAAGGAACAGAAATGCTGAAATGTTGCCAGAATCAAAATTCTCTTCCTTACAAAACCAGTTTTATAGGACAAAAAAATTTAATTTCCCTTATAACTGAATGCTCATATTTATCTCAGAAAACTACAATTTCGAAACCAAGGTGAGAGAAGAATGCCGATGTACTGATTATGTGTAGGAGACATTGTGAGAATGTGAGAATCCTAATCTTAATGTCCCTCACTTGGGTGTGTGTATTTATTTGTATTTCCCACTCTCCCATCCCACCACGAAGACCTCCATATCTTTCTTCATTTCTCTATTTTTTTGAAGATGTCAATTTCTGTGTAATGTATAATTTCTTGAACACAAGCTCTGTTTAGCAAACTTCAACAGTAATCCCCTAAAGAATCTATTCTCTGAGTTTCACTGACAATTTTTTGAAGCTCTCCATTTAAGTGTTATGGAAACCTTTGTTTGAAACTGTAATAACTGTACTAAATAAAGGTGCCAGGAGAGACATGAAAATAAGCTATATGTCTCATGTCTTATTTTTCTATTTATTATTAGAGGTTTTGTTTTGCTTTGATCTGATTTTTTCTGGTAACCAGAGGAAAATCATCTTTATCACTTTTTTAATGCTTTTCTTTTGACATGAAACAAAATAATAATAGAAAGACAGAAAAGTATATATGCATTCTTTTTGGTCTCTTAAAGCCAATAAAGCAGCTAAATTTTATGTATCCATGTATGTATGCATGTATTCAATATTTTAATGGTCTTTCTTGAAACATAATGCTGTATCCAAGCATCAAGTACTATAAAATTCAGGTCTGTACAAAGCCTCATAAGCTCTTTTAGAGACGTGATTTCAAAAATATTGATAGCTAATAAATTGTATTAATGTTTAAAGAGATTTTATTTGTTTGTTTAAATTAAAG
Seq C2 exon
CACCCTGTGGAGGCAATTTAACAGGATCTTCAGGCTTTATTCTTTCACCAAACTTCCCTCATCCATATCCGCATAGCAGAGACTGTGACTGGACTATCACCGTCAATGCAGACTATGTTATCTCCTTGGCGTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164796:ENST00000297405:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
NA
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development