HsaINT0042480 @ hg19
Intron Retention
Gene
ENSG00000110925 | CSRNP2
Description
cysteine-serine-rich nuclear protein 2 [Source:HGNC Symbol;Acc:16006]
Coordinates
chr12:51470194-51477333:-
Coord C1 exon
chr12:51477122-51477333
Coord A exon
chr12:51470431-51477121
Coord C2 exon
chr12:51470194-51470430
Length
6691 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATG
5' ss Score
6.21
3' ss Seq
TCCTTTTTTTCCCTGGGCAGAAT
3' ss Score
9.7
Exon sequences
Seq C1 exon
CGCCCGAGTTGCCGGAGACGCCCGGCCCTCTCTGCCTGCCGGCTGGGCTGCCCACCGCCCTCCCTCCCCGCCCTGCCGCCCTGGGAGCTCCCCGGCCGTCGCCGCGGGGCCCGGGACTCGCTCGCTCCTCCCTCCTTCCCACCGGGCTAGGGCGGCGGCGGCAGCGGGGGCGGCAGAGACCATCACGGGAGGAGGCAGCTGCGGCGGGGCCG
Seq A exon
GTAATGGGCCTAGGGGTGCGGGGCGGAGGGTGCCGCCTCGTCCTTTCTCGGGATCGGCCCTCGGGCGGCCGTGGAGGAGTGGTCAAGCCCAGAGCCGTGCGGATGGAGGGGTCAGAAATGAGAGGCTCGGACGGGAGCGGTCGGGGGGCGGGGAGGTCGGGTGCCGTTGGGAAGGAACCGAGTCGGGAAGAGGCGTGGGAGCGAGGGGCACCGAGGACGCTGGCCCGGACTGCGGGGGCAGCTCGCGGGAGACCGATGGGCGGCTTGGAAGCCTGCAGGATTGCAGATGAGGATTGAGTTCGGAATGGAGTGGAGAATGATGTAGGATGGAGGAAAGTGAAGGAAGGGGAGGGGGAACAGAGGAAAATGTGGGAGGAGTGGTTGGGAATTTGTGAGTAGCAGGCAGGAAGGGATGCGGAAGGCTGGGTAGGGGCTGCAGAGGATTGGAATGAGCGGGAAGGTTAGCAGGAATCAGAGGGAAGTGGGCCGAGAGCTGAAGGGTTCGGCAGGAGTGTTCATTAAAAGGAACTGGTGACTTGACATGTCCCTTCGCTCCGGTTCCTGATGTCTCCCATATTTCTGGCGTCGTGTGGGAAAATGAAAGCATCAATTGCCCTGGTTGCTAGCTTGATCTTTTTTCATAGGCCCAATTACGCAGCCAACTGCCACCCGTCCCTTTTAGTGCTGTGGTCTTGATTCATCCTTTTAAAGGGGTTGAGAGTGGCAGTGTGACACACAAACTGTTCTTCAGAATGAAATGCTAGAAGTTATCCCCACAAGACAACACTGTCCCCTTGTCCTGCAGTTTTCAGTTCAAGGTAAATTCATAGTTCAGATTTTTTTCTTCACTGGCTTTCTGTCTTGCAAATCCACAAAGCCAGGATGTTGGTTGTGCCGGTGTTATAAATGACTGGATATCCTTGAGAGTTAATGCAGCATCATGTTCCAGTTCCCACAAAGATCTGTCTTCCACACGATGGTAGTTTAGGCATGGAAAATTCTAACCTTGTGTTAGTGAATGGGTAAAAATCGGGGAGTGGGGGTGGTGAGTGCACGGCTTTCTTTAAACACCTAACTTAAGCGGGGGGTTTTCACTTGGGTGCTTTGTAAGTTCATGATCCTGGTGATCACAAAGACACATGGATCCATGAAATTCATGGTATATGAGAAACAACCACAGTATCTTGTAAAAGGAGAAACAGGGCAGGTCATTTTATTCAGGTTTATGGTAACACAGCAGCAAGCCTTCCTTCCAACCCAGCTACAGATGGTAGCCCTGACCATCTTACTGGAGGTTTTGATTCCTTGACCTTTAGCAGAAGGTTGGGTTCCAGTCAAGTGAAGAGGCTTTCTCCTGTGAGATGTAGCTTATTACTTTGGACTCATTTAAGAAAGAGACTTATATTACCTAAACTTTGCAAATAGATTCTTCCAGAAAATTTTGCCTGGGCAGTCCCTCTTGCTGCTCTCACATATGCTGTTTTTTTTTGTTGTTGTTGTTGTTTGTTTGTTTGTTTGTTTTGGTGGTTATAGGAATCCTTTTAGGCCTGAAAAAAACTTAGATCTAGTACTAAAATATACATATTCTGGTGGAACTGTTTATTAGGTGCTAGCCTGATGTATTCTGTGCTCTGGATCTTAACTATTTCATATAACTTTGGAAAATGTTCAGCTAGAAACTCTTGAGAAAAGACCATTAGACATGTAGCCAGAAAGTGTCAGCTGACCTTTCATTTCACTGGCATTTAAAAGCTTTAAAGAGAGTTGCATTATTTTCTCCAAAAGCATTTGTTGAGTTGGTCATTTTGACAGTTAACTGTCGGTTTTTACCTGCATTCCTAGGTGCTAAAACTTACAAGTGTATCTCTTGAACACAGGCATTGATCCTCTACCAATGAATAATTGAGAGAGGTAGGAATGACTGATTTTTCTAGTTGTAGTTTGAAAGATTAATTTGATGAATTGGAAAGTATGGAAACTATTCTGTTACTATTGCAAAGAAAGATTTATTTTTTTAAAAAATTTATTTTTATTTATTTTATTTTATTTTTTTAGGCAGGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCAATCCTCCCGCCTTAGCCTCCCAAGTAGCTGAGACGACAGGCTCACACCACCATGCCCAGCTAGTTTTTGTATTTTTAATAGAGGTGGGGTTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGGCCTCAAGTGATCTGCCCGCCTTGGCCTCCCAAAGTGCTAGGATTACAGGCATGTGCCACCATGCCGGGCCAATTTTTTGAAAATACAGAGACAGGGTCTTGCTATGTTGGCCAAGTTGGTTTTGCACTCCTGGCCTCAAGCAATTCTCCTGCCTCAGCCTCCCAAAGAAGGATTTCTTCAGGGCACCATGGAAGTGAACAGGAGGTTTGTTCTTGGTGCCCAGTGAACATCTTCATCTAAAAGTCGAGTTCATATCAGAGAGTTGGACAAGGGGAGCTGGGTTGAAATTTAATCTTACATTGTTGTTGGGACATAATCTTTTTTCTTTTTAAAAAAATGGTGGAGCTAATGTCAGAGAAAATGCTGCTAACAGAGCCTGGGTAGGGTGAAGAGAGGAGTCCTTGAGGATTTCCCTGAGTGCCATCCATGTGAATGGAAGAGTTTGACCATAAGTCAGTATACATGTTATTTACACACATAGCCATAGGTTCCAGTTATTCTCAGACAGCTTAAGGAAAATACTTTTCTCCTAGGTGTCACATCTTTTTCCTTCTTTCTTACCTATCTCCTATCATTGCCCAGAAACCACTATTCCAGAAGTAGAGAAAACACAGAAAAAGAGGAGAATAGAACAAGCAGCCAGCAATCCTTGCTGCATCCAAGTTCACAAAAAGTAACCTAAAGATAACTGATACTCCTGCGGGCAGCTGGGTTAAGACCGTGGAGAATTGTAGTAATAAAGATGATTTTGGATCAGACCCAAGTTCATATGGGGCTTAAAGAGAAATATTCACCGGAGATACTACCAGAAGCCTGGGGACACCTGAGGAAAGAACAGGAGTGGACAGTTACTTCCAGTCATAAATCCTTGAGTGTTTCCAGGCTAAGGAAAAAGACCGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCTTGCCTTCTTCTCTTCCCTCCCTCCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTACTCTGCCGCCCAGGCTGGAGTGCAATGGCGTGATCCCAGCTCACTGCAACTTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGAGATTACAGGCACTCGCCACCACACCTGGCTAATCATTGTATTTTTGGTAGAGACGGGGTTTCACCATATTGGCCAGGATGGTCTCGATCTCTTGACCTTGTGATCCACCCGCCTTGGCCTCCCAAAGTGCTGAGATTAGAGGCGTGAGCCACCACACCCAGCTTTTTTTTTTTTTTTTTTTTTTTTGACAAGGTCTCCCTCTGTTGCCCAGGCTAGAGTGCAATGGCACGATCTTGGCTCACCACAACCTCCACCTCCCGGGTTCAAGCGATTCTCCTGCCACAGCCTCCTGAGTAGCTGGATTACAGGCATGTGCCACCACGCCTGGCTAATTTTTTTTTTTTTTTTGGATTTTTAGTGGAGATGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCAGCCTCAGGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATGACAGACATGAGCCACTGTGCCCAGCTTTATTCTGTCTCCTTAAAAAATTCCACCCACATAAGCATTCAATCACAAGGGGCTCCCCCTCCCCGCTACAATAGAATGGAATGAGAAATTTGTTTGTCGATCGGTATCTTTTTTTTTTTTTAATACTTTAAGTTCTAGGGTATATGTGCACAACATGCAGGTTTGTTACATATGTATACATGTGTCATGTTGGTGTGCTGCACCCGTTAACTTGTCATTTACATTAGGTATAATCCCTCCCCGCTTCCCCCACCCCACGACAGGCCCCGGTGTGTGATGTTCCCCATCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAACGTGCGGTGTTTGGTTTTCTGTCCTTGAGATAGTTTGTTCAGAATGATGGTTTCCAGCTTCATCCATGTCCATACAAAGGACATGAACTCATCCTTTTTTATGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCATTGATGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGCCTCAATAAACATAACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATCCTTTGGGTATATACCCAGTAATGGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCTTGAGGAATCGCCACACTGTCTTCCACAATGGTTGAACTAGTTTTCAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTGCACATCCTCTCCAGCACCTGTTGTTTCCTGACTTCTTAATGATCGCCATTCTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCGTATCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCTGTTGGATGCATAAATGTCTTCTTGTTGATCGGTATCTTTAAACCCAGCTAAAATCTTAACCCATAAAAAGCCCTTGGCTCGCTCCTTTCTTACCATGCCCTAAGAATGTGACCTCTGATAAGATCAGTAACATGAAGAACTAAACTGATACTTTGGGCTCGTTTTTTAATTTAATTACAGTTTTTATCAAATACTTGATTTTTTTTTTTCTTCCCTGGCAAATTTATTTCAGGAATGTGCTTGTCTGAGACTTCTGATGGCTGAGGTTTCTTAGGTACATCTTGTGACTTGAATGCAGAATTTGATGCAATCTGGATAGATTAGGAAATACCTTCTCTAAGGTACTTATTACGTCTGGTTGACTTTGTAGAGCTGATCCAAGAGCAGGCAAATTGCTTCCAACAGACACAGTCCAGAAAAGCAGCTCTGTAGCAGGCATCTCTTGACACCACAGTATATTCTGGGTAGCTGCTCTGCAGTAATGCAGCCCTGTCGTTCTGGGCAGTGTTGTTATTCCTGCTGCATAATTAGCAACTAGTGAGATCATAGTCTGGGGAGATTCTGGCATTACTGAGGCAAGGGAGGGTTCGTGTCTCATCACACATGGCTCCCGCTTTGACAGCATTTCTGCTGAGCAGATTCGTGTCCTTCTGGAACTTAAATCCAAAGATGGAGGAAAAAGATTTGTACCTAGGGAAATGGACTATCTCAGACTCCTTGGTTGTATGAAAGTGTGTTGAAAACAACACTGCATGCCATATTGATATAACCAGAATAAATAGTTACTTCTCTTGCTATTTGTTTTCCCCTTGCTGATTTCTTTATAGAGGGCAAAGATTGTAAAGCTACAATGTCCTTGCACAGAGGATGGTGACAGACCAGATGAGCCCTATTTTATGGAGCAGTATGAGATTGGGAAAGATTCTGGGTTTTGAAGCCATGCAGATTCTAATCTTGGGTCCATTCTTTGGTACCAAATTTGACCTTTATAGAAGCCTGGTGAAACACTTTACACTTATGAAGATCTGGGTAAAGGGTTTTCCTGACTGCTAATGTCCTTCAAAATTGAGTGCCTGGAGCAGTATTTCCCAAAGTGTATTCCAAGCATTATTTGCACTCTAAAATACCTTGGAAACAGTGGGTTCCTTAATCACGTTTGTAGAAACACTGCATTCTGTGTTCTCTCAGCCTTCACCATCCTTATTAGTATATTAAAAGCCTCTAAGAAGTTCCACTATAGGCAATTTTTAAAACCCTTTTGACACAGCAGTCGTATTTCTATGTAAAAGCTATTAATACCATAAGACACGCACTTTGGGAAATGCCGGGCTGTATTATCACTAGGAAAAATAAGTGGGTCTAGCCGGGTTCAGTGGTGTGTGCCTTGTAGTCCCAGCTACTCTGGAGGCTGAGGCAGGAGGATTGCTCGAGCCCAGGTGTTCAAGACCAGCCTGGGCAACATAGTGAGACCCTGTTTCTAAAACAGATAAATAGTTGGGTCTAGTCTTGGTTTAGGCAAAGCCTAATTCTGCTTTTCTTTTTTTCCTTTTTTTTTTTTTTTTGCCAACCAAACAAGCAGCAGTGATAATTGTGTTTTTGATTTCAAGTTCTTCTCACTGGTGCCTTGGAGAGCTTTTCTATATGATCAGAAGAGCAGCTACTGTGATTCCTGGGCTAATGAAGCCTAGACCCCAGCTGGATTGGAAGCAAAGGCCTTTCCTTCACTGGGAAAGGTGCTGCTGCTACCCATCTCATTATTCTAAGAGTGATTGAGAATAGAGGGGCTGAAGGGAAACGAAAGTAGGAGAATGTTGGCCAGAGCTAGTAGAGAAAGAACGTAATATTGAGAAAGCAGACATCAGTGCTAGGTGAGGTGCTTTCTTTAGAGAGCTGTGTGTATAGACTGGGGAGGAGTCTGTCTGGGGACAGGAATGCTGATTCCTTTTTTTCCCTGGGCAG
Seq C2 exon
AATCCTAATGTACCTGGCTAGCTGGTGGTGAGTAGGGGCTTTGGGGCCAACTTGGTGGGCTCCCCAAGGAAACCCCTTTGAAACCAATGGATGCATTCACGGGCTCGGGTCTCAAGAGGAAGTTTGATGATGTGGATGTGGGCTCATCAGTTTCCAACTCAGATGATGAGATCTCCAGCAGTGATAGTGCTGACAGCTGCGACAGCCTCAATCCTCCTACCACTGCCAGCTTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110925-CSRNP2:NM_030809:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.608
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)