GgaINT0074948 @ galGal4
Intron Retention
Gene
ENSGALG00000016094 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr4:89290624-89298510:+
Coord C1 exon
chr4:89290624-89290820
Coord A exon
chr4:89290821-89298441
Coord C2 exon
chr4:89298442-89298510
Length
7621 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TGTTTTTCCTTCTCTTGCAGACT
3' ss Score
12.51
Exon sequences
Seq C1 exon
CTCCGGGGGAGGACTACATGTCCCATCGTGCCCCGCGGGAGCTGCGGAGGGCCGCGGCCAATGAGAGAGGCGGCGCCGCAAGGGGCGGGCCCGGCGGCGGGGGAGGCTGTTTAAAGTGGCGCCCGCAGCGCGCGAAGGGGATGGCGGAGCCGGCGGACTATCCCCCTTTCCAGCTGGGGAAGCCCCGCTTCGAGCAG
Seq A exon
GTACCGACGGCGGGAAGGGCACGGGCGTGGTGGGGGGAGCGGTCCTTCACGGGAGCGGCGTCGGGCCCCCTCCCCGAGAGATAAGCCCCCCAACCCCCCGCCACCCTATTTTCACCCTCTTTGCCTCCGGCGCTGCGCTGATTGGTCCGCGCCCTGCCTCCCATTGGCCCACGTTTCTGTCACTCAGAGCCGCAGCGCCCCGCCCCGCGGCGGCTCCCGCGGCGGGCGGCGATTGGAGCGTCCCGCCGTGCCCCTGTGGCGCTGCGGGGAGGGGGGGGCGGTGTGAGGCTGTGGGGTTGTGGGTTCGAGACCGGGGAGGGTTTGAGGGGTGAGATGGGGGTCCCGGCAGGGGCCCGTGTGTCGTGCTGAAAGATCGTAACGTGGCCCTGGGGGCAGAACCGGCTGAGCCTGCACCCGGTGGGGTGTCTGCCAGCCCAAGGTTGTGTGGAGGTGAAGGGGGGGGGGGAACTGTGAGAAGCGGGTGCTGGGCCCCTTGGAGTTGGTGCACCGTGCAGTAATTAGCCTTGATTTAAAATAAAAAAGTGTGGAAGAAGCTGGTGCTTTTGTGCCGAGGAATGTGGTGTTGCCATAAGCGGTGGTTTTGGGGTTTCTGCAGGATTTGGGCCTGCTTTGGGCTGTATGAAGCCCAAAAGTGTGAAGTGATGGGTGCTTTGGGGACTGTAGGGGCCTTTTGGGGCCCCTTGAGGGGCCTTTTGGTGGCCCTGAAGGCCCTTTTGGAGGCCTCGAGGTGCTGTTTGGGGACCCCAGGTGGCCTCTGAGGCTCTGGAGGCACCTCCTGGGGAACCCGAGGGATCTTTTGGAAGGATCTCCAGGGGCTTTTTTGGGGGGTCTTGAGATGTCTTTATTGGACATTACTGCTCTTTGTTTTTGCCTCAGGCTTCTGATAGGGCTCTCAAAGTTCCTGCAGCCTCCTTCATCTGTTTCTGGTGCGGGATGAGGCCGCTCTGAAAAGGATAGAGCCCTCTTAGCTATCAAATCGAGGAGGAGCCGAAGCCTGCTCGCTAATAAGTCCTCCCCCCGCCATTGGGGAAATCTCCAAGGAGACTTTCTTCCCACCATCCACACGAAATCTGCACAGGACCACTGTGTGCCAACCATCTGACTCGTTAATTGCAGATCCCAGAGCTTGGCTTGACCGAAGCCGCCCATTTGGGTGGTGGAGGAGCCTGGTTATGCTTCCTTCAGAGGGCCAGATCTCTGTGCTCTTCCCCGTTGACTTATCCCTCGTTCCTCCATAGGGTTCAGGACAGGAGGTGGTGCAGGGACCTCCTCAGAGCCACAGCTGCCCTACAACGAGGAAGGGTGTGCCTACTTGGCTGCACGAACCGAGGGATGCTCAGCCTGGGGAGACAGAGCTTTTTAATAAGGAGAGGAGGAGGAGGAGGAGACGCTACTCCCTTCTAGACACCACAGATGATTCGAGGCACACTTGGCAGCGCGTCAGGCACAGAATCGGTGCATTCTGTTCATTAAGGAGTGACTGTCACTTGTAGCAACGTTTAGAAAATGTTTCGAGGGGTATGGCAGGATGTTAATGATCGTGTACGCCTTCGAGCAGAGCTGTCCTCTCCGGCTGTATATCCACTGTGTCCCAGGGGTGAGGTTTTCCTGGTTCTGAAAACACCCTTGAGAAGAGGATCCCTTCTCCTCTTCAGGGATTTGATTTGGTTCCCATAGTTTTTTTTTTTCTGCCAAGCAGTGTATAGGACTCGTGGTAGGAGCTGCAGGTTGGGTCACTGGTGCCCTTGTCCTGCTGCCTCCCATCTCTGTAATGATGCCCTTTCTCCTGTTCCATGTCCACAATGCATTCAGACAGCCCAGTCTGGGAGCTGGCAGCTTTGTAGGGTCATGGAGCAAGTGAGGGAGGGCACCTGGCCAGGTCCTGTGACCTGGTTGCACCATCCTGACCCATCCTCGGAGCATGCTGGTATTTATTTAACCATCCTGAAATGTGGTTGGTCAGGAAACCTCCATCTCCGGGGCTGCAGGACAGTGCTGGGAGGAATGTGTGAGTTGCAGAGGAGCTGTGTTAGGCATCTTTGTCCTTGCAGGGAAAAAAAAAACACAAGGAAAAGTTGTGTGCTAGAAACAAGAGGCTTGGTGAGCAAACTTAGTTTGGAGGATAGGAGGCAATTTCTGAGGTTCAGAGTCTTCAGAATGACCTCAAGTTGTGCCAGGGGAGGTTCAGGTTGGATATGAGGAAAAACTTCAGTCAGGCACTGGCAAAAGCTGTCCAGGGAGTGGTGGGATCACCATCCTTGGAGGTGTTCAAGAACTGTGCAGTTGTGACACTTGGGGACGTGGTCAGTGGGCATGGTGGGGATGGGTTGGCGTTGGAGTTGGTGATCTTGGGGGTTTTTCCATCCCTAATGGTTCTGTGGAAGGAGTGGAGCAGTGTTTAGGGTGGCTTATGGGAGGCTCCTATCCCCAGCATGGCCCTGCAGCACATTTCCCTCTCTCACCCCTTGCTTTGCAGCTCACTAGTTTGTCCTGCTCTTCAGGCAAGTCTCATCTGTCAAGTCACATTTCTGGTTTGTTTGCTGGGAGCAGCTTTTGCCTCCCGACAGAAGCAGGTTATTTTTAGGTAAAAGAATAAGGACATCAAGCATGAGAATGCGTGACAGGGGCTTCATTTTCTGACAAGCAGTTTTAATTTGTTAAGCACACTCCTTTTCATTTATTTACGTCTGTGTTTTAAGTTAATAGGTTTTGCTGTCTGCTCCCTCCAAAACATTATACTGAAGTTTCTGAAGCTGTAACCCACGGCCCCAGCTTCAATCCAGGCCAAATAAGTGCGTGTTTGGAAGCTCTAAAGAAGGCGTGGGACGTGGTGGTTCACCAAACAGTGCTGTGAACTGCTGCAGACAGGTAGTGCCAGCTAAACTTTAGGGCTTTTATTGCTGTCAGCCCTCTAAAAAGCACTGTGAGGCTCTGCCAGCAGGAGGAAGTCCCAGATCTTGGGTCCTATAGGGGAAGGAGAGGGAAATAAGGAGGGTGAACTTAATGCAGAGCTGCAAGCATCGTATGTTGCTTGTGCAGCTCAGTGGGACTCAATGGGAGCTGGGGGCTCAACGTGTGGTCGTGGCTCAAAGCATGCTAATCTCAGAAGCGTCCTGCGTGGATGTTAGTGCTGAAAATCATTATTGCCAACTCTGTGTGCACTTTGATCTGGGAATCTTAAAACCCAACATGTTTACTCCTCCCTGAGTCAATCCGTGTGCCTCCCGTGTCCCAGATAACCCCTGCAATAACATGCAGATAAAGCAGCCCTTGATTAGATATGCCTCTCAGGAGCTTGATGGCTTGCTGATTGCATGCATTAATTGCTGAAGGCCCTGATAGGAGGGCCCAGAGCTGTGTTGGAAGGGTCTTAAATAAACAAGAGTTCCTACTCTTGCTTCCACCTTTCAAGCTCTTTACTACTGAAAGTGGATGAGCCGCCTCATCCACTTTGGAGAAGGGGTTTCCCGAAGAGGTTATAGGGGGATGCTTAAGGCTGCTTTGCAGCTGCTGTGGCTTTGCTGTATGTGCAGGTCCAGCCCAGCGTGTGGATGCTGCTGGAGATGATGCTGGCACGTGCTGCATGGTGCGTGCCGCCGCCAAACGTGGCTTTCTCAGCCCTGAGTTGGGGCTGACCCTGTTTATCCTATGCAGTCGGTTGGGTTCTGCAAACACATGCTTAAAGACGAATTGCAGAGGAGAAGAGGAAATACAGACACCTTTTGGGTTTGGTGTTTATCTGCTAACTTCATCGAATCTGCCAAAAAAGCCATCCGTTGGCTTTTTTACATCTCTGTCAGCCAGGATTGGATTTCAAATGGAGTTTGCATCGTGTGCTGGGGGGTGTGTATGCTCAGGGGTTGGGCTGAGAAGCTGAAGGTAAGGCTGGGATGTGTGCTGGGGTGAAGCAACCTGGGAGCAAACTGTAGGATCCATGCTGCGATCCCACAGTCTGCAGCAGCATGGGAAAGAGGAGGAGCTGCTGCTAGAGGGAGAAAATGAAGACTCGCCACTTCGCTGTGGCTCTCAGGGCATCTGAGCCCCCACCTTTCACTTCAGGTGGCTGAAGGTGCAGGGATGGACTCCTGGCCTTTTAATGTACTTAAATTTAGAGTATTAAAGGGCTGTGATTACACAGCTTAAGCTTAAGTATGTGGGGTGGGCTCCCAGTGTGTAATTGCACAGCATTGCCGTGCCAGCATGCAGTTACTCAATGGCTTGTATTTTTTAATATATATTTTCTTTGGTTTAGCTGAAATCTCTTCCTAATTAATTGAGAGCTGACGTAAGCCTGGCTTTTTAATTATTTTTTTTTTAAACTAGGAAAAAAAAAAACAACCCCACAAGTCTGTGTGCCTTTTGCTCTGGCTTAATTAAATCCTTTTTACAATCACGCTGCAATTAAATGAGTAAAGTTGTGCGTATCTCCTTCCAGTGCTGAGGAATGCCCACCTGCTTTAAATGACGGTGATTAACCGACTGCTTGCTGATGGCCATCCACTCCCTGCCCTTCTCTCCAAATTCCTGGTGTCTTTTTCTTCCTTCTTGGAGTATTTTTGCTGGTGTCCTCTGTCCTGCATGGCCCACAGCACATCCAGGGTTGAGCTGGAGCTCATTGCGCTCTCTTGCTCTCTACAAACTGCTGTGGAAGGGAATTAACATTCCTTTCTAGGACTTTGTCTTGCTTGCAGGCTGGTGAGAAGCAGTCCCAAAATAGCCCCGATTAATCACAGGAAAATTGCAGTATTCAGATTCCCTCTGAATAACCGTTTACTACAACAGATGTTGCAGGAATAAAATGGTGAAAGAGGTGCTGGATGTGTTTGGGATGTGAAGGTCAAACTCGTGGGCGTGTTGCAAGCTCCATCCATGGCATGAGCACAATGGCCAGAACTGGAAATAATCCCATTGGAAGCAACAGTCCTCAATTTTCATTGAAATCTGGGACTGGTTGACTGGTAGGGTTGGGCTGTCCAGCACAGACTTTGGAAAGAGGTGGAAATACCTTGATGTCCTCTTATTCTATTGGGCATGGAGTGATGGATACTGGGGAATAACGTCTTGTCAGATAGAGTGGTTGGGCACTGGCACAGCTGCTCAGGGGGTGGTGGGGTCACCATCCCTGGAGGTGCTCCAGAACAGTGGGGATGTGTCACTGAGGGATGTGGTCAGTGGGCATGGTAGGGTGGGTTGGGGTTGGAGTGGGTGATCTTACAGAGGTCTTTTCCAACCTTTACAATCCTATGAGTGTTTTTTCTTTCCAAGCAGCTCATATGAATAGCAACAAGGAAAAGCACGTTTGTGTAATCATGTTTTCAGACAGCTTCTGCTAATTTGGAAAGAAACGAGAGCCACGGGTGATCTGTCGGGTCTCATTGCCTTCTGTAGGGGTGCACTCCATCTCAGCTGAGTTTGTCTGTGTGTCCCTGATGAGCAGAGCCATCCTGGAGTTGGTGTCAGCCCAGGGAAGAAGCACATCTGCCTTCCCACTGTCTCTTCTTTGAAGTAGTGATGGCAGGGGGATAATTTCTTCATTTTCCCACTTCTTTTAGAAGTGCAGATGAAAGAAGCAGATGCTGGAGGAGCCCTGAGTGCCAGCAGGAAAGCAGTCGGTCCTAGAGCAGCCTGCACCGTGAAGTGCTCTGTGATGTCTGAGCAAGGGGCACGTTGGGCACTGCAGATCTCTCAAATGGAGAGCTGAGTTGAGAGTTGCTCCCGGTTGGTCTTTGTAGAACCATAGGATGGTTGGGTTGGAAGGGACCTCAGAGCCCCCTAAGCCCCACAGGACCCCTGCCATGGGATGGTTGCCCCCCCACTAGTTCAGGTTGCCCTTCCTGGCCACGCAGCTCTTCATGGTCATAGTGGGGAGCTTTATTCTCATTTTTTCTTGCTCTGGGCCTTGGCGTGTAATTCTGCTGTACTATGAGTCAATGCTATGACCCCACTCCAATGGCCCTGCCCATGCCTGGGCTGCAGCAGGATGAGTTTGGGCTGCTGAAGCAGAGTGAGTAATCAAAGGAAGGTAGCAACACGCCAAGCTCGCAAACGCTAGAAAGTACCAGAATTAGCGTTAATTAAATCAACGCTAATTAAAAACCACTGGGCTTTTTTTTTTTTTTTCATAACTTCTGTGAAGCTATTTTGTTCAGTTGCAGGTTTTTTTTTTTTTCTTTCATTTTCATGTAGAACATGGGGAAAATAACAGCACGGAGCATAGGAGCGGCTGAGAGCGGGGTTGCAAGGCAGGGTGGTGGGCTGCAGTGCCCCTGGGATCTGCTTCTATGGAGGGGTTTCTGCTTCAGTAAGTCACAGTATTGGTGGTATTTTCTCTGTGCTTCGTGGATTCAGCAGAGAGGAACCAGCAGGTTTCATCAAATTACACCAGGCGGTGATTAAATGCCATTCTCACTGCTGCATCCATATTCCCATCCTTTATTTATAGCACTGCAAATACAAAAAGAGAGTTGTTTCCCTGCTCGTGGCCGTAGTGCAAAGGCACCCCAGCGTTCGTGAGCGTGCAGAGATTGGTGGCTGTGTCCTTTCTGGGGGTGCAGTGGGTGCAAATTCTGCTTGGGAAGAGCCAAGAGAAGAAGGTCAGGCACTGGAGTGGGCTGCCATGTGTCCCTTTGTCCTCACTGATGCTTGGGCTGCTTGGGTGGAAGTTGGGGCTGCTCATGTCTGCCCACCTTTGGTGTGGGTGAATGCAGACCTGGGCTGAAACAGTGATGTGCTTTGCATATTTCAGTTTTGTGGTCCAGTGCTTTGGGCTTGCCTACATTCTGTTTTGACGTTTAATTCCTGGTACTGAGTCAGAACTGCTCTGCACTCCTTTGAAGCTGCCCATGATCCCTGCAGTCTGTTTCACAGGTTCCTCCCATCCCTTCAGGCAGTTCCCAGCTCTCTGCATCCCTTCCTGGTCTTCCAGCTGCAGTTGCTGCTCCGGGTGAAAGCATGCCCCATCCTTGGCGGCATTCAAAGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGCTGGTTGGTGACCCTGCACATAGCAGGGGGTTAAAACTAGATGAGCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGATTAAGATTGAAAAAGACCTCTAAGGTCATCAAATCCAACCATCAGCCCATCCTCACCATGCCCACCAACCACATCCCATCTTCACCACACAGTGGAACACAGATATAAGTGCATCAAAGCTCCAGATGCCTTCCAGGAGCATGAAATGTACTGCAGGCTGCAGAAATGGGGCTCATTTTGTAGGGTGTGGACCCTGCACCCTCCTGGGCAATGCCACGCTCTCCCCTCCCCTTGGTTTCTGTGCTGTTCCAGACATCTTGGATACTTGTACTTCAGTGGCTTTTTTTTCCAAATGTGCAAATAGAAACGAGCCCAAACCATAAAGCCTTGATTATTGTAGTGGAATCTTAAGGTTCATAGTCCATCTGTCACCCTGTGTTGGTGTGGTGACTGGCACAACGAAACCCAGCCCCAGCTCAACACCTCCATCACTCTAATAGCCACATGACACAGCACTTGGCTTGTCCTTCATCTAACTGAACACGTTTTGTTTTTCCTTCTCTTGCAG
Seq C2 exon
ACTTCGTTTTATGGCAGATTCAGGCACTTCTTGGACATCATCGACCCACGCACTCTCTTTGTTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094:ENSGALT00000025934:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.792 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=PU(0.6=3.3)
A:
NA
C2:
PF0382012=Mtc=FE(62.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]