MmuINT0142653 @ mm10
Intron Retention
Gene
ENSMUSG00000033720 | Sfxn5
Description
sideroflexin 5 [Source:MGI Symbol;Acc:MGI:2137681]
Coordinates
chr6:85319522-85333422:-
Coord C1 exon
chr6:85333308-85333422
Coord A exon
chr6:85319591-85333307
Coord C2 exon
chr6:85319522-85319590
Length
13717 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTCCTCTCCCTTTCCCTAGACA
3' ss Score
12.23
Exon sequences
Seq C1 exon
AGTGGCCATGGCGGATACAGCAACCACAGCCTCAGCGGCGTCCGCGGCGGCCAGTGCCCCGAACGCCTCCACAGATGCGCCCCCTTTCCAGCTGGGCAAGCCCCGCTTCCAGCAG
Seq A exon
GTGAGGTTCGGGATGCGACGAGCGGGTGGAAGGGAGACACAGGGAAGGGCACGGAGCCAAATCTCTTGCAAAGTCACTTCAGCTCGAGGGTCTCCAACCCGCGGCCACCAGAGCCTACAGCTAGTGCGGGGACCTTGGCTGTAGCCGCTCCTTTCCTATTGGGCAACAGGATGGGCGAGGTCTCCCTCTCTGGTTTCCTATTGGCGGGTGGCACAGTCATTCCGCGGATGCCCGCGCCCTGGCACAGCCCCCGTCCTAGTCGCTCGATGATTGGCCACGCGGGTCGCGGTCCAGGGTCCGAGCGGCTCTGAAGGGGTCGCTCTGGCAAATGCGCCCTAGGCGCAAAGTTCCCGTCTTGTGATGCATGGGCCGGTGGTGTGGCCGGTATGCTCCTCAACTTCTCCCCGAGTGGGACTGACCTTTCTTGTGAGCTGCGGGACAGTCTCCGGGCAAAACTCCCTGGGCACGCCCCATGGTCATGCTCCGGTTCCTCAACCTCCAGCAAGGTGCTGCGTGTGCCCTAGGATGGGACCGCGTGCACCGGTACAGCGACCTGATCTCTGTCCGGGGGCCTGGGGCTTCAGTGATGAGACCAGCCGGACAGCTAGTGCGTTCTGCGGGGATGCGGCTGGGACAACGCGGAGAGAGCCCGGTGCGGGGAAACGCTGTGTCATTCTCCGAAGCTGAGCTCTCCTCCCAAGGGTCCCAAGTGCGCCCCAGTCCTACTTGCGCTGCTCCCGGCCGCTGCGCAGCGCTGGCCCCCATCCACACCCGCTTGGGCTCTTCAGGGTGCACCGTGACTATGATTAACCTTACTTGGGGACACGCCAACCCAAGAAACCCGGGTATCACTAACTCGGCCATGGAACCGGAGGTCCAGGTCTGTGAGCCAGGAGCATGGGAGCTTAGTTATTACGCCGCAGACCCTCAGACTGCTTCCAGAGCTGAAGTGACCCTGGGCTTGCCAGGAGTGGGGACAGCAGATGTGCTAGAGAAAACTTTGAAGGAAGAAAGAAAATGCTACAAAGGTGGGATGTGGCTGGGTTTAGAAGTGAGAATGGTTCCGAATTCAGCCCCCCCCCCAACTTCGTCGAACTAAGCTTTCTGAGAATACGTCCCTAGAGTTTTTTAAAATAGGACTTGTTTTCTTTCAAAAATAGACATGTCTCTGCATGGAGGAATCTGGAGAGACTTAATGTCCCAGCTAGTGTAAAATGCCACCAAATATTGAGACGCTGTCAGGGGTGTTTGTGCCTAACCTTGAGTGATCCTCCATTTGTCCCCACCCCCATTCTACGCATCCTTAAGTAAGCCTGCACTCCCGACTGGGAAACACTTGCTGTCTTTGGAACCCCCACCCCAGTTGTCCTATCAAGAACGCCAAACTCCGCTCTGAACCCCCCAGTGGGAGCCTCGCAGATGCAGATTACTCTTCCAAAGTATTCCCTAGGTCCTTTTCCGGATAAAAAGTGGTTGTTGATCTTACCCCAGGCAATTGGGTTTTTAATAACACGAACTGAGTAAGGGCTTTTCCCCCAATGTCTGGTGTCTGGTATCTGGAATCTGGATGGCTCATGGGTCATCCATCTACCCAACATTTACTGAGTACCTTGTATTGGCTTCCTGCCCTGGGCTCTTCACTCTTGTGGAGTGTGTTTGGGGAGGATTAGTTTCTGCAGCTGTTCACATCTGTGGAGTATGCAGTGGCCTCTGCAGAGGCCTCCAATGTTGGCATCCTAGTGGTCTGATAAGAAAGGGTGCTGAGCAGGTCTGAGTCACCGGTGCTGAGAACGTCTGTTTCTTCCACACCTGCTCCTCCCTCTGCAAACAGCTCAGCCTGCCACCCAAGAACTAGAGTCTTAAGCCTCCATTCATCTCTGCTACTCCCAGTCCTCCCCTTCTCCCCCACAGCTCTCCTAGCCTCCCTCTCCAAGGCTAACCCAGTCCACACGTTTATTTTTTTGGCCGACATGGGAACCTCCGACAGGTTCCTGGGTTTCCAGTCCTGCTCTGGCCGTCTCCCAGCTCCTCCTTTTCCTCTATGGCAGAGTCCCAACAGTGCAGGTCTGATCAGGTGATTCCCATCCATGCAGCAGTCTTTAACAGCCTGCACTGCTTTCCTCTATTTGTGAGATTTAGACCTCACATCTGAAGGGACCCAAAGTTTTTCAGGGCCCACTCCTTAACATTTGACTCCCCACTCACCCCCTTCTTTACACCATTCTAGCAGTTTTTAACCCTCGGGCTTATCCTGTTCTTTCCCATGCCTGGGCTACCCACTGGAACATGTCTTGTCTCTTGCTCTCAATTCTTTTTGAGCACCTCTTCATCCCTACGTTATCCACAAATCATCATTTCCTCGAAGGAGCCTCACACCCTTGGCTTATTTGTTACCATGTTTCTTCCATTCCATCATATGGGATCAGGGACTGTGCCTACCTTCTCTCGGTGTTGTTAGGTTAGGTTATCACATTAACAGATTGTCTGGATGGATGAGGTGTGTCTCAGAGCTTTGTGAATGAGTGGGGCTGGGGTCTCCTATGGGGTTTGTGAAATTGAATGAAATTGAGCTACAAGCCTTTGATTTCAGCAGTTGGCCAAATTGTATCTAAATTGTTCCTTAGGAATTTTGGAAGATGGCAACAAAATTGTTCTAGTCTTTAAGAAAAAATTCTAAAGTCAGTAGTTTGCCACATTCTTCTGAGTGGACAGGTTCCTTCCCCGGGCTGGTCTCAAAATTCTCCATGTATGACCTTGCATATCTGACCCTCTGCCTCTACCTCCAGACATGAGCAGCCCCGGTGTTTATGTGGTACTGGAGGTAGAATCCAGTTTTGCACATGCTAAACAAGTCTTCTGTCAACGAAGCTACATTCTTTGCCTGGGCACAGTTATCTTCCTCTGGATCCTGGGTCCTGTTCTCAGTGTTTGGCACACAGTAGGTGTCTAATGACTGCTGATAGTGGACCTCACTGACCTAGAAGATTCTGTTGACAGTGTGTCATAAACCATGGTCCACTTTTAGAGCTCCATCCCAATCCTCAGGGTCTCCTTGGGCCTCAAACTTCCTATGTAGTCACAAATGACCCTGAACTTGTAGCTCTCTTGCCTCCACCTCTGAAGCACAGGGGTGACAGGTGTTCCAACAGCACACCTAGTTTTATGGGTGCTGGGGACCAAACCCAAGGCTTTGTGCATGCTAGGCAAACACTCTACTAATTGAGCTACAGCCCTAGTCCTAGTGCTTTTTGTAGGATTGGGAACTGAGGTCTTACTTGGCTCTGGAAGTCCTTTCTCACCTCCCTGATCAAAGGTCTCTCTGTAAAGGAGGGCAGGGGAGAGGCAGCAACCAAGCAAGGTCAGAGGGTAGGAAAAGGGTGATGGATTGGTTTTGTCTATGGCTGCCTTTCTCTCCATAAGATGTTGATGATGGCCAACAGTCCCCTACCCCTTTTTGAATATTGGCTTATGAAAATTTTACGGCCCTTTGCGACAGGTACAATGACCTTTAGTTTTCATGTAATAACGTTGCCATTCACAGATTCAGTGACTTCCCAGGCAGCCAAGTTCCAGAGTCCAGGCTTATTTATTTACTGGCAACTTTTTTTTTTTTTTTTTAAGACAGGTTTTCTCTCCGTAACCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGTTAGCCTTGAATGTAGAGATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGGTGTCACCACCTGGCTGCTGAGTTAATGTTTTATAGACTTTCAAAGCAAACCAGGAGGTCCAATGAGGCAGGTCAGTGCTGCACATGGCCCTGTGGGTAGGACAGAGGTACTAAAGACCCAAGAGAGATCTCTTTATGTCAGTGTTCCTTATTCTGGAGGTTTTCAACCCCCAAATTACAGCCTTTCATTTTCTAACCCTTGGCTGCTCATCTTTCAACTGCAGCTTTGCCGGGTTAAGACCAACCTTATTTTACCTGTGTTCTTCCCTATTCTTAGCCAACGAATTGCTTTGAAGCAAATCTGAACATCCTGACATTTCACTTACTAGCTAGTGAGTGGGTATATCTAAAAATAAGGGTTTGTGTATGGTGTGCATGCGTGAGTGAGTGCGTGTGTGCGTATGTGTTGCATCTGTGTACTCCTGTGTGTAGAGGCCAGAGGACAACTTCAGCTGTTGTTCCTCAGGTACCATACCCAGCCTGGTTTGTTTTACAAACTTAAAAAAAAAAAAAAAAAGGGTGAGGGTATGAAATCCTGTAAGAATTTACATAAGTTAAAATCTAGAATTCCTGCACAACTTTCACACAGGGTCCTTTAATATCTCACAGGGCCAATGGACATTTGCCAAAAATAAGAAATCAAAGTTGGTGGCTGGAGAGATGGTGTAGTAGTTAAGAGCTCTTGCTTGGGAAGAGTTCAGTTCCCTGGCGATGGTGGCGCACGCCTTTAATCCCAGCACATGGGAGGCGGAGGCAGGCCAATTTCTGAGTTTGAGAGCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAACAACAAAAGAAAACCAACCAACCAAACAAAAAAAAAAGTGTTCAGTTCCTAGGACCTATGTTAGGTGGGTGCTCACATGGCCTGGGACTTCTGCTCCAGGGGATCTGACACCTCCTTCTGGCTCCTATGTGCACCCACACATGTGTGACACACAAAACTTTATCTTTAAATTTTTAGTGGTTCTTTGTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTAAGATTTAATATTTAAGAGAAAGTTGGGGCGGGGGGGGGGGCATTGGGGTATGTGCAGGTGAGTGCAGATGCCTCTGGAAGTCAGAAGAGGGCATGGCATCAAATTCCCAAGAGCTGCAGCTATTTGAGTCCTCTGATGTGGGTGCAGGTACTGAGCAACCTGAACTCAGGTCCTCTGGAAGAGCATCTTTCCGGCCCCCAGGGTTTGAATCTCTGTAACAAGCTGCAATGCAGGTGACATATCACTTCTGAAATGTGCTTCCCTCAAAACCTGCAGCTCTGTCTGTCCATGGGGAATGCACTCAACACACCCAAACTGTAGATGTGCTACAAAATACCCCACCAGTTCTTCCCAACACTGTCAAGGTCAAAAAGTGAAGGGAGTCTGAGAAACTCAAAGTCCAATGGATGCAGGCTTGTTTATTGGTTCTCCCCCATTTCTCCCCTCTTATATATTGAAGAAACTGGGTTGTGTCCCTTGTAGAACTCGCCTCATTCAGATGTGGCTGGTTGCATCTCTGTGGTGCTGTTGGGCCTGTCCTTTTGTCCCGTTTCTGCTTTGTTTTTAAACACTACTCCATAGTCCTAGTGGAAGAGGACAGCTCGCCTCCTAGGAGCCTCTGAGACCTGCTTTTCTTCCTTCTTCCCTCCTCTTCTGTTCTCAGTTTCTTTTAAAAAGTAGTTTGAAGCTGGGCATAGTAGCACACATCTTTGATTCCAGTTCTCAGGAGGCAGGCAAATCACTGTGAGTTCAAGGCCAGCCTGATCTACATAGTGAGTTCCAGGACAGCCAGAGCTACATAGTAAGACCCTAAGTCTCTGAACCTAGGGGGAAAAATTATATGTATATATACACATATACTCAGAGAGATATGGACTAGACACACATGGACTGGAGAGATGCCTCAGTTGTTAAGAGTCTGAGAGATGGCTCAGCAGTTAAGAGTACTGACTGCTCTTCTGAAGGTTCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATTCGTGACAAAATCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAAAACAAAGTGTGAAACATCTAAGTTTTATTCTTCATTTTCTTCACTTTCTGACCTTGACAATGTTGGGAAGAACTGATGGGGTATTTTGTAGCATCCATTGTCAGAAGACTTAAAACAGCTTGTAGCTCCTGCTCCAGGGGATCTGACATCTCTGGCTCCTCAGGGTATGGCCATTCATGTGCACATACTCTCACACAGACACATAATTAAAAATAAAATCTTATATACAAATAACTGAGTCTAGTTAGTGTTGCCAGCATACGCATGGAGGTGGAGCATTTTTCTGGGGACCTAGCAGCAGCCACACCCTTAAAGAACATTGACTCACTTTCTCCAGCAATCATAAGTTGCCTGTTGCCCCTTGTTAAGGGTGAGGCCTCAGGAGCCCCTTCTTTATCCACTCTGGGATGCTGACTGGCTTGGTCCCAGGTACTCAAGGCTGCTGTGTGTTCATGAGTGTGACAGCCGTGTGTCCAGAAGACAGCACATCATAGCATCCCGTCCCATCTGTAAGGCGCCTTCATTCTTCCCCTGGTCAGTCTCCTTCCACAATGTTCCCTTCATTTTCTTCACATTCCACCTCTCCCCCCTCCATTCTTTTCTTCCCTTTAGACTCAGGTACTGATTTGGCAACTTGGGGCCCCAGAACAGGAAACCACAAATGGCCTCTTCCCCTTTATTCTTCCAGTTATGCAGAATCATAGTTGTTTGTTTACCTTTTTTCTCCATATCTTTTATTTTTTATGTCTTTTTTAAAAATGTGAATGGATGTTTTGCTTACATGGACGTCTGTGCACCATGTGTATGTGTGTCTGGTCATGGAGGCCACAAGAGGACATCAGATCCTTTTGAACTGGAGTTACAGACAGTTGTGATTTGCCATGTGGGTGCTGGACATCAAACCCAGGTCTCCCCTGGAAGAATAGCCAGTGTTCAAATCACTGAGCCATCTCTCCATTGTGGTTTATTCATTTCTTCAGTGGGTTTTTTGATTGTTTGTTTGAGAAAGGGTCTCTCTTTGTAGCCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCGCAGAGATCTACCTTCCTCTACCTCTATGTGCTGGGATTAAAGGCAGGTGTTACCACTGCTGGGCTTCTTTGATATTCTTGCTCCTTCAGAAATCTCTCTTACCTGATCAGATGGCTGGGGTCAGAGTGTGTCATGTGTGTGCTGGTCTCTAAGATGGACCTGAGCTGATGGCCTGAGGAGGCTCAGTCTGCTTGTGGGATTCAGAAAGACTCTGGGTGGCAGAGTACACCCCTTACATCAAAGTTGAGAGATTGAATCATGTGGTGGTGAGACTATTTCTCAGATAATTTGCTTGGAATAAACTTCTAGAATCCTAGTCCCTGCAGACAGGTCTGTCGTTTAATCATTTATTTTGCACAAACTGACTGTTGCCAAAATAGCCTTTGGGGTTTGTGCTATGGAGGAGGTGCAACAACTGCCCATAACACTGGGCAGGCATCTTCTTAAAAATTTACCTTTTACTTAAGTATGAGCATGTGTTTGCACATATGAGTATATGGGCCCCAAAGGGCCAGAAAATGGTATCAGATCCCCTGGATCTGGAGTTATTGGTAGTTTTGAGCCACCCAGTGTGGATGTTAGGAACTGAACTCAGGTTCTCTGAAAGAGCAGTATTCTCTTTCAACTTCTGAGCCATCTTTCCAGCCGCTGGGTAGGTACCTAACTAGATACTGGTGTCTGAAGCCCACCCCGACCAATGGAATCAGCATCCTGGAGATGTGGCCTGCCTGGGAAGTCCCAGGTGATGATGTATGGTGCTGATGCAGAGAGGATGTCTGGGCTGCTCACAGGTTCAGTGAAGGGTCATGCCGAATGCTCACTAGCTTGATCCTGTGCAAATAATTCCTGAAGAAGGGTGATTTTGAGGCTGGGTCTGGGACTAGAAGGCCTTCTCTGGCTTTGCTGGGCTGTACTTGGGAAGGGGTCAGTTTGGGGTTGTTGGGGGAGGGGTGCTACCCACAGTGAGCTGACTCAGCTAGCTTGTGAAGGGAAAGGGAAGGAATCATTTCGTTGACTCATTCTTCCAGTAAAGAAAAAGGGAAAAAGAGAGAGAGAAAAAAAAGCACTGTGTGATTAAGCAAAGATGGGGCTGAATGGGGGTGGAGGAGGGGCAGACAACTATACATTTTAAAGTACTGAGAAGGTAAAATGAAACCAAATCTAGGAAGTAAAAACTGCTTGCTATTCAACGGGCAGAAAAGGACAGACATGGATGAAATAGTTTTTCAGCAGGGAAACAATGTTTTTTGACAGAATCTAGAAACACTGTTTCTAATAAGAACGCAGCAAGGAACAATGTTTTTTGACAGAACTGGGAAACACTGTTTCTAATAACCGGCCACAGCAAATAAGTACTGAAGCTACTTAGTCCTGCTCTTCTTTCCCCCATTTTTCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCGCGCTCGCGTGGACTTGTGTGGTTTGCATGTATGTATAAGTATGTTTCTGCATGTATGTCGACGGTGTGCATGCACATGTGTACACCTACATGTGGAGGCCTGAGGTTGATGTCAATCATTCTCCAACATCCCTATTATTCTTCCATCTTACTCATAAGGTAGGATCTCCATCAAACTCAGAGCTTGCCATCTGCCTACTCTTGCTAGCCAGCTTGCTTTGGGATCCCTATCTCTGCTTTACAAGGTTGTCATTACATGTGGACCACCACGCCTACCTAGCATACATGCTTGAAGGCAGATGTCCTAATTTCTGAGCCATCTCCCTATAACCTAGAAACTTGAAGATTATGATGGTTGGAAGCTTGCTGTTTTAGTGCAAGAATGAGACTCGGGACTGGGGAGATGGCTCAGCCGTTAAGCCTGCTCTCTGTTCTTGAGGTTCCAGAACTCACATGGCAGCTCACAACCACATTTAACTCCAGTTCCAGGGTATCTGATGCCCTCTGGCCTTCTTGATAATCTGCATACATGTGGTACATATAAAATCATGCAAGCACACAAACACAGATAAACAAGCACACACACATATATGATATATACTTAAAAAAGAATGAAATATGCACATTTTCCTTTTGGGATGCCTCTCCTGTGGTAGGTAAGCTCTACCACTGAGCCAGGTCCTCAGATCAAACTTATTCTGTTTTTGTTTTTTGTTTTTGTTTTTGTTTTTGCTTTTGCTTTTTCAGCACTGGGAATGGAGTTCTGGGGCTTATACATGCCAGGCAAGTGCTCCACTGCCTAGCTACATCCATCCCTAGCTCCCTTGTATACCCTTCTTCCATTGGCAAAATCATGACACTTGGCTTCTTAATCAACCCCAGCATTTAGTGTCAAGGAGTTTCTGGTCCTAACCCTGCGCACTGATCTTAACTGTAGTTTCCATAGAAACAAGAACCCATGTCCTGTCTCAGTCTGGACCTAGGTCAACTCTTGTCCTGGCAACCTGGCTTTACTGGGAGTGGATGATGAGTGGCTAAAGCATACCTTTAGCGGACACTCTGTGCCGAGTGTTCTAGACCTTTTCTGGCAGATGCCCTACAGTTCCCCTGCTGTGCAGCCTCCTTGCTGCAGTTAGTCAGTGAGACTAACTGCCAGACTCAAGGGCAGACCCTTAGGTATCTTGGGCTGACAGGCCCTGTGTGCTTAGCATCCCAACCCAGGGCCCCTTTTTGGAAGTTTCCAGCCTATATTTCTAAGCACTTGTTGAAAAGATCTGGAATATTTCAAATGCATATTTCAAATATAACAGATCAATATAGACTTTTTCTCTTTTCAAGGAAAATATTGTGTCTCTTGCTCTCCTTACTCTGGCCATTAGCCTTAGACTTCAATTAAAACACTAGGCATCCTGTGAGTATTCTTCCTCAATCGCTTATGGTCGGTGAGCTTGGCTTTCCTCTCATTGCTAGCACTGCATGTAGCACACAGTAGGGTTTCAGAAGGTAGTTCAACAGGTGAATGAGAATCTCGGCCCGTGGCGCACTTTCTGACCTTACCTTGAGTTCAGTGACATCTGCTCCCTCTGAGCTCTGCTTTCTGGACATGCTCCCTGCTGTATCCCAGGAAGAACCAGGAAGAGGTCTAGGTGTCTCCAGTGCACTTCATGACACCTTCTTTGAGCACTGATCATGGTATTTTTAGCTCTTTGTTGGTCTATTTCTCTGTAGTCAGTTATTGGTGGCTCTGAGCAACTGCTAGGCATGTCCAGTGTGCCTTTTCTCCAGGCCTGGCTGAGCAGCCATTTGCAGAAGTCTGTGGAGCAAATGCTTTATCTGGGACTCATCCCCAACAGGGGCTGTGATAGAAAGGACCTTTGGAGGGTTGGGACAGGATCATCTCAGGGTGAGTCAGAAGTCACTTCCCTTGGGCCATTCCCTTGAGGATTCTCACCTGTACCCCTCTCATTCTCCTCGCCCTTGAACAGCTGTGCTTTCTAATCCAAGCTACACCCAGCCACGGTCCCTTCAGGAAGCCCCAAGGCCATGGGCTGTTTATCAGTTCACATTCATTTCCGTGTCAGATCTGTCTGTGAGTAGAAACCAGGCGCCAACGAGGAAGGGGAGAGAGCATCTGAGCACCCCTAGTCTCTGAAAGCTTATTATCAAGTGTATCACTCAGGGTCTGGAGGGATGGCTGGGTAGGGAAGAGCATTGGTTGCTCTTGTTAAGGCCTTGGGTTCTGTTCCCAGTACCACATGGTGGCTCACAAGTGTCTGTAACTCCAGTTCCAGTCTGATGCTCTCCTCTGGCCTCGGGCACCAGGCATGCACATGGTACACATATATACACTTGGGCAAAGACTCCATATACACAAAGTAAAATAAATAATTAAAATATATTACAATAGCCACTAAAAATAGAATATTATTACTTTTATTTTTGAGGCAAGGTCTTACTATGTATTTCTGATTGGCTTAAAACTTCTTATGTAGACCAGGCTAGCCTTAAACTGAAAGATGTAGTAGGAGGCTGGCCCATGGCCTACATGAACCGGTATTTCTGGAAGGCAGGCTGGGGCTAGAAAAGAATGAAGCCAAGACAAATTTTTCTCTGATCAAGCCCCGCAAGTTTACTAAGAGACTGTGCTTATAAGGGGGGAAGGCCCACCCCCCCTCCCGCAGTTGACACTTAAGAAGCCAGCCAAGTTGGAAAGCTGCACCGCAGGTGGCCCCACCTCAGTGGCGACAAGGTCTGCATCAGCTACAGAAAGAGATCTGTCCTCCTTCCAGATTCCCAGTGCTGAGATTAAAGATTTACATGACCATGCCCACCTCCTCTCTAGTCTATTCAAGTCACCTTGTAGTTCTTGTCTCTGGAGAGTAAGGGGCACTTGCAGCCACCATCCATTTAGAGGTGAGCAGAAATCCTGGAAACAGAGCAGAGATACACATCACTACTAAGGACATCTTTAGTCTGGAAGAAAGTAGAACAACAGCGCCTTCTTGTTGGGTTTTGTTGCTGCCCTGTGCATTCAGGTTTCTGATTTTTACCTCAGCTACTTGAGAATAGGTTACATTCATTCACCCAGAATTCTTCAGTGCACGGACTCTATAACTCATGGTCACTATGCTCAGGAAATTTAACATAGCTACAGTATTTTTCACCATTTTTATGTGTCTGGGTGTTTTTCCTGCATGCATGTATGTATGCACTGTTGGATCCCTGGAACTAGAGTTACAGGTAGCCCTGAGCCACCGTGTGGGTGCTGAGAACCCAATACAGGTCCTCTGCAGGAGCATCAGTTCCAAGTTCTCACTTTCTAAAACCACACAGTATATTAGTTTTATTTCATTCCTGTCCCAGCCCTGGAACAGCCATATCTTGGGGAAAACCCTGGTTCTTTTATGGACTGGGTGTCATCAGGGGTTTTTGTTCATCCTTTAGTGTCCACAAGTCTTGGGGCTGTATAGTGTAGTTGATAGGAGTACTTGCTTAGCATACATGATGCCCTGATTCAATCCCTTGGTAACACACATACACACACACACACACACACACACACACACACACTCCCTCCATTCTCTGTCTCCTGGCTTATTAAGTTGGACTCTTGCTGATAGCATGCATTTTATGAAATCATGATAATTTTTTATTAAAAAATTATTTGAAAGCACAAGTTGACTTGGTGTTCACTCAATTCATGAACAGTTCAGTGGGGACTCTCCTTTGTATTCTTAGGGATGAAATTTTGCTAGGACAGTAGGCATGAATGTGCACCGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTTAAGTGGAGACTAGTTCCAGCCATTTGGGCTATGGAGGTTAGGAAAGAACATATTTGGCTTAGGATTAAGTGCTGAGGCTTAATCTGGGCTCTGCTCTAGAGTGGAGGGGCTGCCCCATGCAGGCATAGCTGATGGGCAAAAGCTGGAAGTGAGGAACGGGCTTGATGTGCCTGGGAACCTTAAGATCCCTCAGGGGAACCATGCAGGGTCTTTACTGGGAAGGAGGGACAGGAGTTGACTGCATCGTGAGCTGCCCTGGTAAGCAGTGAGAGAGGGGGAATGAGTGGGTCAGGCCTTCAGTTTCCTTCACTGTGGTACTCGGAGAGATGTGGGACCCTGGGAGGACTTTGGGGCCAAGCCCAGAGTGCAGTTAGGCATGAACCCCCACTGTTTGCATCTTGCCCCTTCATCCTTTAGCTAATGCCTTCTCTTTTCCCTCCCAGCTCAGTCTCGCCCTATTGGCTTTGTCCTCAGGCAGAAGGCCCAGCAGCCCTGTTGCTTGGTATCCATTCAGTGTGCTTGAATGCCTGTGGCCTGCTTAGCACAAAGCCCTCCTATTCCAGGGCCTCTGCTCCTGGGCAAGGCTAGGGGAGTTGGCCCTGCGTTCTGTGCTTCACCGTGGCAACAGGGCAGCGAGCTGAAGGAGGGTCTGGGCTGTGAGCTGAGGCTGCCATACTTGGACTCTGCCTGCGGGAAGCTGCTCTCTGAAGGCAGAGCAGAACCTCAGAGAGGGGCCCCGTGAAGGGTGGGCAAGCTCTCTCTCTGGAGTTCCTGAGCAAGGAAGGTGCCCATGTACCTAGGGATGCTTGGGTGCTTCTGAAGTGCCTAGACTAGAGCTCAGGACAGTGGGGCAGGGAGAGAGAAACCATGGGAGACACCTGGAGGAAAGGCTCGAGAATTATATATAAATATTAAAGGGGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACATATGTGAATGCAGGTACCCACAGAGGCCAGAAGAGGGCATTGGATCCTCTGGAACTTAAGTTACAGGTAGTTGTAAGCTACCTGCTGTGGGTGCTGGGAATCAAACTTAGGTCCTTTGCAAGAGCAGCAAGTGCAGGTAGTGTTTGAGTCATCTCTTCAGCCCCAGTCATGATGTATTGTTTCTGTTTGTCTGTTTGTTTTGAGACAAGGTCTTTCTATATAGCCCAGGATGTCCTGAAACTCACTCTGTAGACCAGGTTTGCCTCCAACTCACAGAGATCCACCTGCCTCTGCCCGCTGAGTGCTAAGATTAACAGGTGTGGTGGCTCACACAAAGGTATCATGCAGAGGTATGTGTCTTAATTCTCTCTGAGTTGATTTTAAGAAGCTCCCAGCCCTGAGATGCAGACTGAGGTCTCAGTAGGCTCCATCACCCACATGGAGAATCCTAGGGACTATGGATGAGGTCACCATTATCCTGAGCTTAGGTACAGCCTCTGACTGATTCTCCTCTCCTCTCCCTTTCCCTAG
Seq C2 exon
ACATCCTTCTACGGTCGCTTCAGGCACTTCTTGGACATCATCGATCCTCGAACACTCTTTGTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033720:ENSMUST00000045846:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.573 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=PU(0.6=5.6)
A:
NA
C2:
PF0382012=Mtc=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types