HsaINT0148846 @ hg19
Intron Retention
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:16073]
Coordinates
chr2:73285657-73298965:-
Coord C1 exon
chr2:73298733-73298965
Coord A exon
chr2:73285726-73298732
Coord C2 exon
chr2:73285657-73285725
Length
13007 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTCTCATCCTCTTCTTCAGACG
3' ss Score
8.34
Exon sequences
Seq C1 exon
AACTACACTCCCCACAACGCCTTGCGCCTCCCGCTCGCTGCGGTTGATTAGGGCCAATCGGGAGAGGCAGCTGTGGCGGGGGCCGAGGAGGGACATTTTAAAAGGGCCGGAGATTGCGGGCGTCAGTGGCCATGGCGGATACAGCGACTACAGCATCGGCGGCGGCGGCTAGTGCCGCTAGCGCCTCGAGCGATGCACCTCCTTTCCAACTGGGCAAACCCCGCTTCCAGCAG
Seq A exon
GTGAGGACCGGGCTGTGGTCTGCGGGCCGGCGGGTGGCAAAGAGAGGACGAGCAAACTCCCCTCCAAAGTCCCCTTCCGCCCAAGGGTCTCCCACCCGCGGCCAGCGGAGCCTGCAGCTAGCGCCAGGGGGGGAACCTCGGTCACAGTCACCCTTTTCCCATTGGTCAACGGGGCGGGCGCGGACTCCCATCTTGGCTTCCTATTGGCCCTTGGCGCCGTCACTCCCCGACTGCCCGCGCCCTCTAGCCTTTCCCGCCCGCGGCGCCCTGTGATTGGCCACCGGCGGCTGCGGTCAAGGTCCCGAGCGCCCGGCTTCGAGCGGCTGCTCAGGGTCGCTCCGGGTTGTGCAGCTGCCCGCCCGGGACGCAAAGTTCTAGTCTGGCCCTGGATGGGAAGTTGGCGTGGCCGGGATGCCTTCTAACTTTTTCCCCCGGTGGGGACTGACGTTCCTTTCGAGCTGCTGGCGGTGCCGCCGGGCAGCGTCGCGCCCCGCGGTCACTCCCCAGCCCTGGCCCCCAAGCCGGGCTCGGCGCGCGCAGCAGGTTGAGGGGGCGAGTGCCGAGGCGAGCGGCGGTCCGGCGTCCCCCGTCCCTGCTCTCCATCTCGGGCTGAGGATTCGCTGACGCAGCAAGCCGGCCGATGCCCTGAGGGGACGCAGCCAGGGCGTGCGGGGGAAACGCTGTGTCATCCCCTGGGGCCGTCGTCCCTCCGAGGGGCTGCCGCCTGGGAACCCCCCCCCAGCCTCTTCCTCGCTGTGTTCTCCGCGGAGGGTCTCCCGCGCCCGGGCCCCCGCGCCGCCGGGGACTGGCTCTGGGCACACCCGCTCAGGCTCTTCGGGGCACGGCGACAGGGGTCCTTTCCCTCCGGGACCTCCTCTGGGGCGTCGCCGACTCGGCCCTAGACTGCGGAGGCGGGGGTGGAACGCGGAGCCCGGGCGCCTGGTTGGGCCCGGAGACCGGAGCCGGGGAGGGGCCGCTCCCGCGCCGCAGACCCTCGGGCTCCCGCGCCTCCCGCACCAATGAGACGGAATTTATTAGGAAACAGGCAGAGAGACCGCTGAAGTGAACCGGGGCTTGCCAGGGGTGGGCGGCAGCCGAGGCGGCCAGAAAAGAACTTTGAAGGAAGAAAGGAAATTGTGCTAAGGTCGGTGCGGTGGCTTTTTTTTTCTTTTTTTGTTGTTGTGGTGGAAGGGGACTGGTTCCAGCAAGGGGGTGCCCCGAGCTTTGCTGATAATTAGGGAACTTGGCTCCTGAGCCGTCTGAAAAAAATGTCCCCAGTGTTTCTTAACAGGACTTTAATTCCTTTTAAAAGTAGGCCATCTCAGCATGTAGGTATCCGAGGCGAGACTGGCATCTTCCTTCCAGTGTAGGAGGCCATCTAGGGCGAGAGTGTCGGGGTGTCCCTGCCTGGACTTGAGTGACCTTATTACATTGCCTGTCCCCGCTCCCACCCCCATTCTGCTCGTTCTTAAAGGCTCAGTCGGGCCTGCCTCTCTGGCAAACACTTGCTCCCTTCTTCTCTGGTCCCATCAGATCGCAGGCTTCCTCCTGCACATCTCTTTGGCCACCTGAGTCAGATCCTCATAGCTCTCCATACAGTCTGCCCTGTGGTCTTCTAAATGTTTGCTGTGTGACGACTTGGTTTCCTCAAACCCCCTGTAGGCCTTTTGCAAGAAGGGGCTGATCTTGCCCTTCTCTGCCTCTGTCTTACCCTGATGGAGACAGGTTAGGCATATAGTAATGTGCCGAGTAAAAGATTTGTGTTTCCTTTTTTTTTTTCTTTTTCTTTTTGTCCTGGTGTCTGTTATCTGTATGTGGCACTAGGGACATTCAGTGACCTAACAGACATTTATCAAATACGTCTTAGTGGCTTATATGACTGAGCCCTGTGCTGTGAGCACTGCTCTAGAGCCATAGATAAACATTTTAGGCTACCCTGTTCCTGCAGCCATAGCGGTACTTCTTTTTGGCACTGCTCTTGAAGGCAGTAAAAGTGTTTGTTGTATGCACTTTTGAAGCTCCCCTCCTCCAGCATAGTGGCCTGCATAAAGCACGTTGCATGTGATTCATCCATGTTAAGGATCTTCTCTTTCCTCCATATCTGCTCCTCCCGCATGGCTCCCTGGCTCTGCAAACAGCCCAACTTGCCACCCAATCAATGCAGCCAGAAACCTGGGAGCCGCCTGTGTTCTTTCCTTCTTCTCCCTCACCCTTTAAATGCAACCAGAGGCCCAGTGATCTTACCTCTTACACAGCTCTCAAGTCCACCCATCTCTACTGCCAGAATCCTAGACCAAGCCCCCATCGTCTATTTCCTGGGTCACTGCAGTAGCCTCACAACAGGTCTCCCTGCTTCCACTCTGGCCCTCTTCCAGTCCTTCCTCTTTCTGCAAGTCAGAGTCCCAACAGTGCAGATCTGATCAAGGGACTCCCTACGCCCTTGTAGATTTAAATACCCTCCAATGGCTTCCCCTGCTTCTGAGATAAAGACCTCACTTCTGAAGGGGCCCCCAAAGTATGCATGGCCCACCCCACTGACTACTTCTTCCTTGAATCCCACCACCCACCCACCCACACTTCGCACCCTCCTTCACATCACACTGGCTGCTTTTCAGCCTCTGAACCCACCACGTTCCCTCCCACCACTGGGCCATCTGCTTGGAACATCACCTCTTCCTCTACCCCCAACTCTTGTTCCCATTCTTCCTCATCCCTGGTGTATCCATGAAGCATCACTTTCTTGGAGAAGCCTCCTGCACTCCCAGGTTGGATTTTTGAGTGTTCGCTTACTGCAAAGTACCTTTCTCGGTGTATACATTGATTTGTGATGAGTATTTCTTTGCCATCTGTGTCTCTCTGTTGACTATGGACTTTGCAGAAGTGGGGGCTGTGCCTGTCTTTACTCCCTGTTGACTCTCCAAGGCTCAGCACAGTGCCTGGCAGTTAAGAGGTGCTTAATGAAGATTTGTTATATACATGAATATCCTGGAGACAATTCAGTAGGGCTTTGCGGACTTGAATTAAATTGACTTGTAAGGTTGTGACTGGGGAGGTGGACCAACTTTTCTCCAAATTGTCCCTTAGGGATCTTACAAAATTGCAAGTGGTGTCATGTTTGACAGTGTAAGGTTCATCAGTGCTGAGACATCCCAGAGTTGGGGTGTCTCTAAGGAGGTGAGTCTAAAGACACAAAGGTTGGCTACATATGTACTGGGTTGATGAGCTCCTTTAGGGCCCAGCCCACATCTCTGTGTCCTGCCCTGGCATGTAATAGTTGTGTAATATATATGCTCATAGTACCTTGTGCTGGCCTGACAGAAGCCTGCTTCAAGGTGGTTGATAATCCAGGGTTCATTCCCAGCACCCATGCCAGGGACATGACCCTTATTCCCCAATTAATCTCACCGCTTTCTGCAGGATTTGTTACCAAGGTCTTTCCTTATTCCCTGGAGTCGCTCTAGAACTCCTCTTTATTCCCTCAAGTGTCTCCCTGTGCAAGAGGACGGGCAGAAAGAGGGTGGAGGGTGTGGAGGGTCAGAGTGTGAAGAAAGGGTGATGAGTGTTGGTGGTCTGTGACCATCTTTCTCCCCATAAGATGGTGACGATAGCCAAGCATCATTCCAGCCTTTTTGTGTATTGACTTACTGAATTTTCACAACAACCCTGTGAAGCAGGTGCAATGATCTCCAATTTATGGGTAAGAAAACTACAGCACACAAACAGATTAAGTAAATTCCCAGGCAGTCTGTCTCCAGAGTTCATGTTTGTTTGTTGGTTTGTTGTCAACTTTTTATTATGGAAGTTTACAAACATACTAATCTGGAGACAGTTGTCAGTAAACCCCTATGCACCCATCATCCAGCTTCAACAGTTGCCAACTTAAAGCCGGCCTTGTTTCATCTATGCACCCACCCCCCACAACCCAATCAATGAATTACTCTGAAGCAAAGGCCAAACATCCCATCATTTCATTGAACCCACTAGTAGGTATCTCTAAAAAATAAGGACTCTTTGGTTAGCTTTTTAAAAATTTTTTTATTTTGGAATAATTTTAGAGAAGTCAAAAGACAACAAACAATTCCTGCCTAGCCCTCACCCATTGTCCTCTGTTATCATCTTGCATTGCCACAGTACATTTTTCAAAACTAAGAAACTAACATTGGTACATTATCGTTAACTACACTCCAGACTTCATTGAATTTTACTACTTTTTTTTACACTAATGTCTCCTTTCTGTCCCAGGATCCCATCCAGGAACATGTTACATTTAGTCATCATGTCTCTTTAGCCTCCTCTGGTCTGCGGCAGTCATAGTACCTGGGATAGTTTCTCAGACTTTGCTTGTTTTTGATGACCTTGACAATTTTGGAAGATATTTTATAGAGTGTCCCTCAACTTGGGTTGCCTAATGTCTTTCTTTTGGGTTTTGAGGTAAGAATATCACAGAGGTGAAATGCTCTCTTTATCACATGATATTGGAGGGTTTTTTGATTTGTTTAACATAACCATGTCCTTAACACACCTAAAATCATTATTTGTTTTTTCTTTTTTTTTAGAGACAGGGTTTCTGTCTGTCACCCACAATAGAGTACAGTGGAACAGTAATTAATGGCTCACTGCAGCCTTGAGCGCCTGGGCTCAAGCAATCCTCTGGCCTCTACCTCCAGAGTAGCTGGAACTACAGGGGTGTGCCACCATGCGTGGCTATATGTATTTTTTGTTTGTTTGTTTTCTTTCTGTTTTTTCTTTTCTTTTCTTTTTTTTTGTAGAGACAGGTGTCTTGCTATTTTGCTGAGGCTGGTATCAAACCCCTGGCCTCTAATGATTGTTCTGCCTGGCCCTCCCAAAGTGCTGGGATTTACAGGCATGAGCCACCATGCCTGGCCCATTAATTCTTAATATCATCAAGTAACCAGTCGCTATTCATATTTCCCTGACCATCACTTAATTTATTTGTAGTTGATTTGTTTGAATCAGGATCCCATAAGTCCCACATATTATTACCTTTGGGTATTTCTCTTTTGTATCTTTTATTTTTTTTTTTTGGAGACAGAGTCTCTCTCTGTCGCCCAGGCTGGAGTGCAGTGGCATGATGTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAAGTGATTCTCCTGCCTTAGCCTCCTGAGTAGCTGGGATTACGGGCGCATGCCACCATGCCTTGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGGTTACAGGCGTGAGCTACCACACCCGGCCTCTTTTGTATCTTTTAATCTGTTAGTTCTGTCTTCCTTTTTTCCCTTCCTATTGAAGAAGCAGTTGTTCGTCCCTGTAGAATTCCCCACCTTCTCAATGTTGCTGATGGCATCTCTGTGGTAGTGGTTAGCATGTTCCTTTATCCCTTGTTTCTCCTGTAAACTTAAAGTCTATGCATTTAACCACTACTCCAGCTGCCTAGTGAAAGGGAGGAGATGACAGCACAGCACCCAGGGAACCTCTGAGACCTGCTTTGCTTCCTTTCCTCTTCCTTTTCTGGTCATTTCCTCTCCTGAACTCACTGTTTTTCCTTCCGGCCCAGACACCATGTTTGCCATGTTGGGGCCCCAGGACAGGAAACAAACACACATACTTTCTCCCATTTGTGTTTCAGTCCATCTGTAAATAAATTGTTGTCCAGGACCAGGCGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCTAAGGCGGGCAGATCACTTGATGACAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCTGTCTCTACTAAAAAATACAAAAAATAGCCCTTCAAGATTCCCCCACATGGCCAGGCACAGTGACTCATGCCTGTAATCCCAGCACTCTGGGAGGCCAAGGCGGGCAGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCAAAACCCTGTCTCTACAAAATACAAAAATTATGTGAGCATGGTGGCAGGCGCCTATAATCCCAGCTACTCAGGACTGAAGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCTATCTCAAAAAAAAAAATTGTTGTCCAGGTGCAGTTGGCTCATGCCTGTAATCCCAGCACTTCGAGAGGCCAAGGCAGGAGGATTGCTTGAGGCCAGGAGCTTGAGACCAGCCTGGACAACATAGTGAGACCCCATGTCTACAAAAAATTGAAAAACTAGCTCGGCGTGGTAGCATGCACCTGTAGTCCCAGCTACTTGGGAGGCTGGGGCAGGAGGATCCCTTGAGTCCAGAAGTCTGAGGCTGCAGTGAGCTATGATCACACAACTGCACTCCAGCTGGGCAACAGAGTGAGACCCTGTCTCAGAAAGAAGGGAAGAAGTTTTTTAACAACTTCTGGCGAGGTGTGGTGGCTCATGCTTGTAATGCCAGCACTTTGAGAGGCCAAGGTGGGCAGATTGCTTGATCCCAGAAGTTTGAGACCAGTCCAGGCAACATGGCGAAACCCCGTCTCTACAAAAAATATAAAAATTATCCAGGTGTGGTGACACATGCTTGTAGTCCCAGCCACTCTAGAGGGTGAGGTGGGAGAATCACCCGAGTCCAGGAAGTGGAGGTTGTAGTGAGCTATGATCGTGCCACTGCACTCCAGCCTGGGTGACAAAGTGAGACTGTGTCTCAAAAATAAAACAAAAATTCCTTGCTCCTTTGGAAGTCTCACTTATCTGCTGAGATGACTGGGGGTATGAGTGTGCTGGGGACCAAGGCCTAGTGGGGCAGAGCAGGCTGGTTGCACAGGGCTCCCTCTGGGGTATGGAGAGCTTGCTGGGCAGACAAATGCTTTCTTCACTTCAAGGTTGGGAGATTTGTGTGGGCTGAGAGTTGGGAGGCAGGGGGGATATGTCTCATAGTTTGCTTGAAATAAAGTTCTAAAATCACAGTACCTTGCAGGTGGTTATATATTTTAATCATTTACTTCCTATAGGCGAGACAGTGAGTTTTTTCTAGTGCTGCTCCTGGGCTGGTTTGTGCAGTGGAGAGGGGTCATAATTTCCAAGAGTCACACTGGGCAGGTTTTAAAATAGACACTGATGCCTGGAGGCCACACCCAGAGCAATAGAATCAGAATCCCTGGGTGTATGGCCTGGTTTTTGAAGTACCCAGGTGGTTCAGGGTGCAGCTGATTCAGGACTACTGGGCTGGCCCAGCCTTTCTGCTTTGGGCTGTAGGTTCAGCGAGTATATTATTCCTAATCGAAGAGCAGTAATTTGGAGGTCTGGTGTGTGTAGTTGCGGGGCGGTGTCAGCTTCTTCTGGGATCTTTGCCCTCTGCTGCTGCTCCCAAGGCCTGCTCTTCCCTGGGGGGCTTGCAGATGGGAGAGAGCTGGCTGGTGGAGGTGGGAAGGCAGCTGCTGCTGTAGGCCCTGGCTCCTGCTGAGAATTAGCTGACTCACCTTTCTTATGAAGGGAAAGAGAAGGAATCACTTGGCTGACTCATTCTTCCAGTAAAGAAAAAGGGGAGGAAAAACATCCACCGATTGTGCGATTGGGTAAAGATGGGAGCTGAATTTGGGAGGGAGGCTATACATTTTGAACTATTGAGAAAATAAAAATGAACTGAGACTGAGAAAGTATAACCTTCCTTGCCATTCATCAGACAGGGAGGACAGACACAGAGCCAGCTGCAAAGAAAGAATGTTTCTCACGAGGACCCACAGGATCTATAAAGTATCGAACAACCTTCTTCCAGTAACCACCTCTTTCATACTCATGTCTCACTCTATAAGGTCCTAGACTGCCAGGAACTTTGCTGTTTAAGTCATATCATTAGGAATGAACCATCTACCTCTTGATTGGCAGGTCTAAGTCACTTTGCCTCGGAGAATCAACCCATAGCTGCAAATAAGGGGTTTCTGGTCACAACGTTTCTCATTAATCTTAACTTTATAGTTTTTAAGGAAACAAGACCCTGAGTGGTTGGTCCAGACCTATGATGACTCCTTTTCACACAGTCTTGCTTTGCTTGGAGCCTATTGAAGCACTGCTTCATTTACATTTTACTCTATCTTCCTTAAATTATATACCAAATATTTTTCTTTGTTTGGCAAGGCACCCCATAATTCCTCTGCTGTGGTGCTTTTCTTTGTTGAGTGAGTCAGTAAATCTGACTTGGTCAGACTATAGGTTTGTCTCTATAGTGGGTGGGGTGGGGGTCTTAGGGCAATCTGTACCTGACATTTCCAATTCAGAGTCTCTTTCTTGAATCTCAGTCCAAATGTTTGCTGAAAAATTATATCTGGAAGTCCCTTTAAATATCTCAGACTGATATGACCAATACAGAGTTTTTATCTTCTTTCCACTTAATCAGTATGCTTCTTCCTGTCCCTATTCTGGTTAACAAACATTCATGTCTCACTAGAAAGTGAGGCATCATCTGTGGCTGCTCTTCCTCATTTCCCCACAGTCGGTCAGCCTTGCTACCTCCAGGACCTAGCACAGTGCTGGGCACACAGTAGATCCTCGGTAGTGGGTTGAATGATGAATGAATGAAGAGACCACAGGAGTCTGGTGCAGCTTCTGATCCTAAGCTTTATGCTTTCATCCTCTTGCATATACCCTCCTCTGCTAGGTAAACTCATCCATCCCTTGGTCCCAGCTCCTCTGGGACACCTCCTTGACTTAAACTAGGAAGACATAGGAAGAACTCTGTGTGTCCCCAGTATACTTCGCGATGCTTCATTTAAACTCTGATCAGTGTTTTGTAGTTACTTGTTTATAGTTATTAGTCTGTTTTGATGGGCTGTGAGCTCTTTGAGGGCTTGTTCATTTGGTGTCTGTCCCCTGAGCCTAGCTCATTAGGAGTTTGTAGGTGTCTGTGGAGCAAAATGCCTTATCTGGGAGTCTCCCCCAGTAGCTATGGTCGAAAGTGACACAAGAAGGCTGGCAGGGCTGGGACAGGATGAAGACCGTGCCAGACCATAGGACAAGTCAAAGGCTGAAGTTTCTGCTGGACCATCTTCAAGAAGTTGCTTCACTCAGGCCATTCTACTTCCAGGTTCTCTCCTCTTCCCCTGCTCATCCTCTTTCCTCCTTGGACCACTAGCTGCCATACTGTTACCCTTTCCTAATCCTGCCCTCCCTTCAAAGCCCAGCCCAGCTCTACCCCACCCAGAAGCCTTGAGGCCATTGGCTGCTCATCAGCCCACTCATGGATTCCTGTGGCAGAAGACCCTTCCTTCCAGATATGTAAGGAGACTTCGAGCCAGGGAGGATAAGGAAGGAACATTCAATAGCCCATGTCCTTCAGGAGCTCTTAATCAAGTATAATACTTAAAATATCAGTTCATGTTTTACTTTATTTTATTTTTGGAGACAGGCTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCATAGCTCACTGCAGCCTCGAACTCCTGGGCTGAAGTGGTCCTCCTACCTCAGCCTCCTAAGTAGCTGGGACTACAGGTGTATACCACCATGCCTGGCTAATTTTTAAAATTTTTTGTAGAGATGGGGTTTCACTGTGTTGCCCAGGCTGATCTCAAACTCCTGGGCTCAAGTGATCCTATCACTTCAGCCTCCCAAGTAGCTGGGATTATAGGAGCAAGCCACTGTGACTGGCTTGCATTTTACTCTAAATATGTATTTTTAAATGTAATATCATTTCTGTATATTAGGTATAATATTGATTTTTTTAATTTCAAAAGCAATTTAAAGATCTGGAAATATAAATCATACATAAGCCTATTACCCAGAGGCAATCTCTATTAGCATTTTAGTATATTTTCATCTAGCTTTTTTGAAAATATAATTTTTACCTTTTTATTTTGAAACACTTTTAGTCTTACAGAAAGGTTGCAAGAATAAGGAAAACTTCGCTATTTGCCTAGATCTACCAATTTTTAACATCACATTTCCTTTATTATTCTCTTTGTCTACAGGTAATCATAAAGTCTGAAAAGATAGCAAATATACATGGTATCATTAGGACATCTTCAATCTGCATTCAATTATAGTATCTACATTTCCAGGTTTTATGGCTGCCCTGTATTTTTACACATGTTATTTTTCTTCAACTATTTACAAATAGGTTGTATTCATTCATCTCCTAATACATCAGAGTATGTGACTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTGTCGCCTAGGCTGCAGTGCAGTGGCGCGATCTCTGCTCGCTGCAACCTCCACCTCCTAGGTTCAAGCGATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGATTGCACTACCACACCTGGCTAATTTTTATATTTTTAGTATGGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACCCCTGACCTCAGGTGATCTGCCTGCCTTGGTCTCCCAGAGTGCTGGGATTACAGGCATGAGCCACCACGCCCGGTCCAGCATATATCTTTTAAGAACAAGGACATTCTTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCCGAGGTGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCTGTCTCAACTAAAAATACAAAAAAAATAAGCCGGGCGTGGTGTCACTGGCCTGTAGTCACAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTAACTCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGTGCCACTGCACTCCAGCCTGGGCAACAGAGTTAGACCCTGTCTTAAAAAAAAAAAAAAAAGAACAAGGACATTCTCTTATATAACCGCAGTGTAGTAATTATATTCAGGAGACTTAACATGGATACAACACTTTTATTAACCTATGGTCCATATTCCACTTTTGTCACTTGTCTCAGTAATGCTCTTGAGAGCATTCCCCCCTCTACGCCAGGATCCAATCCCGAGTTACACAGTGCATCTAGTTGTCTCTTTAGTTTCTTTAATGTGGAACAGTCTCATTCCCACTCTTTCTTTGTCTTTATGACATTGACATATTTGATGAACAAAACCAATTAATTTATGGAATGTCTGTCAGTGTGGGTTTGTGTTGTTTTCTTGTGATTAGATTTATTTAGTCCCTTTGGAATATTATGTGAGTGATGCTGTGGACTTCTCGGGGTATCACATTTGGAAGAACACAGTGTCCCACCTGCCCTTCGTTGATCCTTTTAACATATCCCCATCATTTTTTGGGGGTAAGACTTCATTACTTCCTGGTGCAACAAAATGTACCAGTTTCATCTTGTACCCTCCCTACCCCAGCCTTTGAATCCGCTCCTTTCCTAAGGAACCCTGGTCTCTGTTAGTGGACCAGGATCTGGATGTCATTTGGTCTTTTTGCTTTTCACTTAGTATCTGTCTAGCTCTGTTTATCCCCTTGTTTATTGAGTTGGAATCACACTGCTTATATGCATTTCATAAAATTTTAAGCATTATTCCATGTCATAAATGTTTGAAAACATAGTTTTAAAGGCTGCATAGTATTCAGTCATATGAATGGACCATCATTTATTTAACCATCCACCTTTGTAAAGAATGCAGCAGTGAATATCCTTGGTATGTACACCTGACCAGATCTTTGAACATCTTGGATTGTTTCCTTAGACTACATTCTCAGAGGTGAAATTTTGCCAGGACAGCATTGTGAGCCTCCCTTATGTATGTCTTTAATGGGAAAATGGTCTGGGCTGTGTGGATTATAAGAGGTTAGAGAGGCAGCTGTTTCTGTTAGGAATGGACCAAAGCTTGATCTGGTTTGTGAGAGACAGCACCTGGGTAGGGGTGGCATTAGGGGTTAGAGGTTGCTTCATGCAGGGGTGCCATGGTGGGAGAGAAATGGAGGTGGGATGAGAACTGGTGTGTGGGGGGACTTTGAGGTGACCTGGAGCCTATTGCAGGGTCCTTATTGGGAAGGGAAAGGAACAGGAATTGGCTGCAGGGTCTGGTGTCCTACTAAATAAGGGGAGGGAATGTGGAGGCTTCTGTTTCCTCCACTGTGCAAAGGATGGTGCTTGGAGAGTTGTGGGGCTCCAGGGAGGAATTTGGGGCAGAGCCCGGAGTGTAGTGAGGCATGAACCCCAGCGATTGCAGCTTCCCCTTCATCCCCGAGCTTGGCACCCTCTGTCTTCCCCTTGAGCTCAGCTTTGCCCAGCTGGCTTAGTCCCCAGGGCAGAAGGCCCAGCAGCCGGGTTGCTTGGTTTCCTTTCATTGTGCTCCAATGCCTGTGGCTGCGCTTAGCATAAAGCCCTCCTTTTCCACGGCCCCTGCTCTGGGGCAAGGTTGGGGGAGCTGCCCCTTGTCCTGCACTTCAGCAGCTACAGGGCTGTGGGTGAAGGAGGGCCTGAGGATTGTGAGCTCAGTGCTTTTAGGCTTGAGCTGCCCTTGGGGATCCCCCCTGGAGGCAGAGCTGGACCTTGGGGAGGGACCCTGTGGCGGGTAGGCAGGATGCTTTGTCACTCAAGGTCCTGAGCAAGGCAGGGAGGCTGGGAGAGGGCTGGGGACCAGGCCTCACCTTCAGCCTACATGTCCAGGGATGCTTGGGAGCTTTTAATAGGCTCAGAATAGATCTCAGGGCACTGGGAGAGAGAGGGGAAAATGGAAGTCACCTGGAAGAGCAGATGGGCCTGTCCTTGAGTATCTCAGTGGTCTCTCTGAGTTGACTTTGGAAAACTCTCAGCCCCAGGAAAGCTGTCCTTAGATTTCTGAGGCCTCATTGGCATTTATCACCCACACGAGGAGTCCTGGGGACCGGGGGACCCCAATCATAAAGGGTGGGGCTCTCCAGTGTCTGGAGAAGGGTGTGCAGCAGCTGATCCATTCACTCTTCTCTCTCATCCTCTTCTTCAG
Seq C2 exon
ACGTCCTTCTATGGCCGCTTCAGGCACTTCTTGGATATCATCGACCCTCGCACACTCTTTGTCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040-SFXN5:NM_144579:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=PU(0.6=5.9)
A:
NA
C2:
PF0382012=Mtc=FE(12.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)