MmuINT0043181 @ mm9
Intron Retention
Gene
ENSMUSG00000044636 | Csrnp2
Description
cysteine-serine-rich nuclear protein 2 [Source:MGI Symbol;Acc:MGI:2386852]
Coordinates
chr15:100319866-100325670:-
Coord C1 exon
chr15:100325465-100325670
Coord A exon
chr15:100320098-100325464
Coord C2 exon
chr15:100319866-100320097
Length
5367 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATG
5' ss Score
6.21
3' ss Seq
TGCTGTTCTCCCCTGGGCAGAGT
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTTCTGGTCTTCGCTGCCCGGGGAGCCAGAGTGCAGAGCCGCCCGACCCCCGCCGCCTGCCGGCCGGCCCACACACCCTGCAGCCCCGAGAGCCACGCGACGGGCCTGGGAGCCGGCACGCCTCGGTCTCCCCTCCTTGCACACGGGCTGAGTAGGCAGCGGGGGCGGCGGAGACCGTGACGGGAGAAGCGGCTGCGGCGGGGCCG
Seq A exon
GTAATGGGCCTGGGGTGCGGGGAGGAGGGGTCCGCCTCGTCCTTGCCTGGCAGCAGTTCTCGGGCAGCCGTGGAGCAGCGCTCCGGCGCCGAGCTGTGCGGACTAAGGAGGCGGGGGGCGGGGAGCCGAGGCGCCTCTGGGAAGAGGCGTGAGAGCTAGGGGCGCCGGGGACGCGGGTCGGGCTGCAGGCTAGCTCGAGGGATGGATGGGCGGCTTGGAAGCCGGCTGGATTGCGGCTGACGGCTGAGTTCGGAATGGAGTGGGCAGTGATGTAGGATGGAGGGAAGTGAAGGAAGGGGAGGGGGCCTGGAGGAAAATGTGGGAGGAGTGGTTGGGAATTTGTGAGTAGCAGGCAGGAGGATGTGGAAGGCTGTGGGGACTGCAGAAGATGGAAATGAGCGGGAAGGTTAGCGGGAATCCATGGGTTGAGAGCGGAAGGGTTCTTCAGCGGTGCTGAGGGGAACTGGTGACTTGGCATGTCCCTTCTGCTCTGATTCCCGATGTCTCCCATTTTTTCTGGCGTTGTGTGCAAAAATGAGAGCATCACTTGTCCCGGGTGCTAGCTTGATCCTTTTCGCAGGCCTAAACACGCAGCCGCCTGCCATCCATCCTTTGAGTGCTATGGTCTTGATTCACCCTTTTAGAAGGGTTGAGAGTGACAGTGTGACACAGAAACCATTCTTCAGTATGAAAGGTTAGAAGTTATCCCCAAGAGATGACACTGTTCCCCGTGTCCTCCAGTTTTCGTGGTTAGAACCCCAGCCGATTCACATTCTCCTTTTCTTTGGTGGCTTTAAATTTTACAGATATCCAAAACCAGGGTGTTGGTGTGTGGGAGAGTTATAAATGGCGATATCCTTCCGAGGAGAGTTAATGCGGCATCATGTTCCAGGTCTCTCACAAAGCTCTGTGTCTTCTAGGATGTGGCTTTAATGTAGGAAGCCGAATTCTAACCTAAACGGGGACAACCTGGGGAGTAGAGGAGGGAAGGGGCCTTCTTTAAATACCTAGCTTAAGGAGGAGGTTTACACCGAGTGTCTTCCCACTTCCACGATCTTGGGGATCGCAAGGACACGTAGAGCCATAAGATAGTATTTGCGAATCACCCACAGTATCTTAGAAAGGGGGAACAAGGTAGGGCATCGTACTCAAGTGTTACAGTGTTGCGGTATAACAGGAGCCTCGCTGCCCCAGAGTGTCTGGTAGTCTTCACAGTCCTATAAGAGGTTCCTTGACCTTTGGCAGAATATTGGGTTTGAGTTGGGTGGAAAGATTGTCCCCTGTGTTAGGGTTTTGGAGTCATTTAGGAAAAAGATTCACATTACCCAAGCTTTACAAGAATTCTCTGTGTCCAGAGTTTCCCCTGAACTGTGTTTGTTGTTGATGATTTTGGGGTCAGTGCTCCTCTGCATAGCACTGTCTGTCTTGGAATCCACTGTGTAGCCCTGGCTGGCCTGGAACTCACAGAGATTCACCTGACTCTGTCTCCTTAGTGCTGGGACTGGGCCTGCTTCGCCACACCCAATTTTTGCTATTCTTATATAAGTTGGGATTTGAGGTTTGAGCCCTTATCAGCCTGAAGAAAGCTTAGACTGAGTACTGAAATATGCATGCTGGTTTTATTTGGTGCTAGCCTAATGTCATCTATGTTCTGTAGCTGAGAACTATATATGACCCTTTGGGAATTGTCCAGCTGGAAACAGAAAACACTGTAAGGCATGTTGTCAGTCAGAATGTGTTATATGAAAAAGCTTTTGTATAAAGAGAGATTATTTGTTGTTGAGATGTTTATTTAGATAGCTAAGTATTCTGACTCTCGTTTCTAGCCTCACCCTGGTTATGTCTGTTTCAGTGCTTAGATATAAAACTTAATAAACTGGAGGGGTAGGAGGGGGTTGAGACAGGGTTTCTTGTAGCCTTGCTTAGCTGCAAACTTGAACTCCTGCTCCTCCTGCACACAAGTGCTGGGATTACATGTATAGACCATCATGTGAGGGTTACAGTATCTTTTTGAACTCAGGCATTGATCTTTTTACCAATGGTTAAGGGAGAAGTTGAGCCAATGGGAATGACTGGTTTCTACTTTGGGTTTAAGATGATGTTAATGTGAATAAAAAAAAAATATGGAACTTGTTCTCGTGGTTACTATAGTGATGAATTAGAGTTTTTCTAGGCGGTATGGAACTAGGTGGGACGTTCATGTTACGTACGTCTTTTAACAAGTCAGGCCCACACCAGAGAGGGCTGAGTTGAAAAGCAAACTTACACTGTTTGCCAGGAGATGATGATAGTAGGAATTGGGGCTGCACTTGGTGCACACACTTGAGAGGCTGAAGCACGAGGACCATGTGAGTTCCAGACCTTTCTCAGGAAACAAGCTGGGCCTTCATGCGGCTGAGCTAGCAGCTAAACTCGAAACAATTAAAACAGGTGATTTTACAGGAAGTCTTGCTAACATCTTGAGTGGGTGAAGAGAGCTAGGACAGTGGAGTCTCGGGTTTTCCCTAGGCTGTCCATGAGATGGTCCGTTGTCATTGTTCTGCGGTGCTGGGAATTGAAGCCAGAGAGGGTGTCGAAGGCATGACAGGCAGCCGCTGTGCTACACAGCCACTCTGTCCCCATCCTTTAATGGAATAGGGTCACATAGGTCAGTCAGTATACAGACCATTTACACATGTAGACCTGACTGTCCTTGGCAGCTTAAGAAAATTACCTCTCCTTACATCTCACAGTTTTCCTTCCTTTTCTTTCCTGCCTACCTCTGTCATTGCCCAACCCACAACCCCAGAGGTGGGAAGGCATGGAGGAAAGGGCTCAGAAGGAGCAGCGGCGGGCGTCAGCGCCACGCTCAAGGGCACAGAGTAACCTGGATCACAGGGTACTCTCGGGCAGCTAGGTTAAGATAGGGGAGAGTTGTAGTAATAAGGATGGGTTTGGCACAGATCCAAGTCCATGTGAGACTAAAGAGGAATAGTTCAAGGAAACCCACACGACCGGAAGCGGAGGATCTGAGAAAAGAGGCAGAGTGCATGCTTGCTTCCAGTCATAAGTCATGAAGGCTTCTTGGCTAAGGAGCAGCCATTTTTTAGAAGTATTAACTAGAATTCAGTTAAATTTGAAGGGGCACTTATGCTTTTTCCAAGAAAAATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCAGTGTTAGTTTTTCATGTAGAAGGCGTGGAGGAGGGGAATTCAGCAGACATTCTCCTTTCCGCTATAGTATCCACATGAATATTTAATGACAAAGGTGCCCCCCCCCATGCTCCTTCACTCAAAATAGAATGGAATGAGACATTTGTTAGCTGGAAGGAGATCATCTCTAAGCCCAGCTAAGACCTTAAACCATACAGAGCCCCTCCGCTCACTTACCTCTCTTTTGCTAACGTGACCTGCAGGCAGCTCCTAGGAACACAGCTCATAACTTGGACTCATTTGATTCTTTTAAAATCTTCTAGATTTTATAGACATAAAATCTTGTGGCATTTTTATCTGCATGTATGCCTGTGTACCATGGTGCCTGCAGAGGCCAGAAGAGGGTTTCAGATTCCCTGGAACTGGGGTTAGAGGGTTGGATGCTGGAACCGAACCCCAGTCCTTTGGAGGAACAGTTAGCACTCTTAACTGCTGACTGCCAGCCCTTAATTATATCTTATATATAAATATTGTTAGTCAGGCTCTATGTATTCCTAGCTGTCCAAGAACTCACTATGTAGCCTAGGCTGGCCTCAAACTCACAGAGATCCACCTGCCTCTGCCTCTCATGTGCTGGGATCAAATGCTTGTGCCACCATCCCCAGACTTGATTATAATTCTTAACAAGCTCTTGATTTTAATTTTTCTTCTTAGCCAAACTTGCTTGAAGGAAGTGCTTGTTTGAAAGTTAAAGCACTTGGGTTCATTTTGTGACATAAATTCAGATTTTTTTTATGTGATCTGAGAAGTTATTTTAGGAAATCCCCAAAGCACCTACCAGGTTTGGTTTAACTTTGTAGAGCTGATCTAAATTGCTACTAAAAGATGGAGACCAGAAAATCCAGATGTAGCAAATACCTCCTGTCACCACAGTGCATTCTGGGTAGCAGCTCTGCAGTAATGCAGCCATGTCTGCATGTTCTGGGCAGTGCTGTTAATCCTGCTGCATAATTAGCAGCTAGTGAGATCATGGTATGGAGAGTCCTGTGCCTCGTCGTGTGTGGGATGTCGCTCAGCCTTTCTCCTGGGTTCACGTCCTTGAGGGGCTTACATCCGACGATGGAGAACAAGGAAGGCTTGTGCCTGCCGTGTCTGTAGCCAGGGCAGTTCTCTTCGTGTTCTCTCTTGATGGTTTCTTTTCAGAGGCCAGAGTGTGTAAAGCTCTATTTTCCTCTGTGCACAGAAAATGATGAGACCATGAAAGATAGAGAATCTGGTTTCTGTTTTGTGTATGGTGCTGGGATCAAACCCAGGGCCTTGTATACCCCAGGCAAGCGCTCTACCACTGAGCTGTACCCACAGCCCCGCTTTCTGGGTTTTGGAGCCAGTACAGATTCTAATCTTGGCTCCTTTCTTTAGTACTAAATTTGCCCATTCTGGGAGGCTGATGAGACACTTCACACGTGTGAAGATCTGGGTCAAGGGTTTTCCTGACTGCCAATGTCCTTCAAAATTGAGAGCCTGGAGCAGGATTTCCCAAAGAGTGTTCAAGAGATTATCTGCCCCCTAACATACTTTGGAAACAGTGGGTTCCATAATGAGGTTGTGAAACACTGCGCTGTTTTCTTCTAGCCTTTACCATGATCATAAGTGTATTAAAAACCCCTAAGAGGTACTGCTTTAAGTAGTCTTCTAAACTATGTTAACACAGCAGTCCTATTTTCATTCAAAGGGCTATTAATATCCAAGAAACTAGTGTGTTTAAGTTATACTCTTGGGGACTTGCCAGACTATATTATCTCTGGGATTAACACTTGGGTCTGGCTTTGGTTTAGGCAAAGGCATGCCGTTTCTGATCTAGTCTCCCAGTGATACCTTGGAGTGCTCTCCTGTGTGATCGGAAGGGCAGTGAGCGGGTAGCCTGGGCCAGTGACTCCTGTGGCCAGCAGGATTGACAGTGAGGCCATCCCTCCACTGGGAAGGAGCTGCTGCAAACTGATTGTTAAGAGTAACTGTGGCCCGAGGGGCTGAAAGGAAGAAGTGAGAGAGCACTGGCAAGAGCCAACAAAGAAAGACCTAGTCAGAGAAGCCAGACTCAGTGCCGGGCCAGGTGTGCAGCTTGTCTGCAGTGAGCGTGCCGTGTTGACAGACCGGCCAGCTCTGTCTTGGGACCACACTGCTGACTGCTGTTCTCCCCTGGGCAG
Seq C2 exon
AGTCCTCATGTTCCTGGCTAGCTGGTGGTGAGCAGCTTGGGGCCATCGTGCTTGGCTCCCCGCGGACAACTTTGGAAGCCAATGGATGCGTTCTCCGGCTCAGGCCTCAAGAGGAAATTCGATGATGTGGACGTGGGCTCGTCAGTCTCCAACTCAGATGATGAGATGTCCAGCAGTGATAGTGCGGACAGCTGCGACAGCCTTAACCCTCCTACGACTGCCAGCTTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044636-Csrnp2:NM_153407:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.686
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: