RnoINT0042834 @ rn6
Intron Retention
Gene
ENSRNOG00000019653 | Csrnp2
Description
cysteine and serine rich nuclear protein 2 [Source:RGD Symbol;Acc:1308916]
Coordinates
chr7:142125802-142132173:-
Coord C1 exon
chr7:142131710-142132173
Coord A exon
chr7:142126034-142131709
Coord C2 exon
chr7:142125802-142126033
Length
5676 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATG
5' ss Score
6.21
3' ss Seq
TGCTGTTCTCCCCTGGGCAGAGT
3' ss Score
8.33
Exon sequences
Seq C1 exon
GGAAGATCCGCAGCCTCTCTCTTCAAGGTGGGCAGCTGCCCTACAGGTGCTCTCCGAGGTCCGCCGAGGACGCTTCAGAACCGGCGAGGGTTTTGCTGCACTGGCCGCAAAACTCCCGCATACTCCCGGCATGCCCTGGGTGTGGGCCGGGTATAGACTCCATTTCCCAGGCTGCTCCGGGCCTCGGCCACGACGCGCCGGCGCCTATAAGAGGCAGAGCGCTGCAGCCGGAGCCTATTGTTAGCCGGAGCCGGGACGGTTCTGGGCTTTGCTGCCCGGGGAGCCGGAGTGCAGAGCCGCCCGCCCCCCGCCGCCTGCCGGCCGGCCCACACACCCTGCAGCCCCGAGATCCACGCGACGGGCCCGGGAGCCGGCACGCCTCGATCTCCCCTCCTTGCACACGGACTGAATAGGCAGCTAGGGCGGCGGAGACCGTGACGGGAGAAGCGGCTGCGGAGGGGCCG
Seq A exon
GTAATGGGCCTGGGGTGCGGGGCGGAGGGGTCCGCCTCGTCCTTGCTTGGCAGCAGCTCTTGGGCGGCCGTGGAGCAGCGCTCCGGCGCCGAGCTGTGCGGACCGAGGAGGCGGGGGGCGGGGAGCCGGGACGCCTCTGGGAAGAGGCGTGGGAGCTTGGGGCGCCGGGGACGCGGGCCCGGCTGCAGGCTAGCTCGAGGGACGGATGGGCGGCTTGGAAGCCGGCTGGATTGCGGCTGACGGCTGAGTTCGGAATGGAGTGGGCAGTGATGTAGGATGGAGGGAAGTGAAGGAAGGGGAGGGGGACTGGAGGAAAATGTGGGAGGAGTGGTTGGGAATTTGTGAGTAGCAGGCTGGAGGATATGGAAGGCTGTGGGGATTGCAGAAGATCGGAATGAGCGGGAAGGGTAGCGGGAATCAATGGATTGAGAGCGGAAGGGTTCCTCAGCGGAACTGAGGGGAACTGGTGACTTGGCATGTCCCTTGTGCTCTGATTCCCGATGTCTCCCATTTTTCTGGCGTTGTGTGCAAAAATGAGAGCATCACTTGTCCTGGTTGCTAGCTTGATCCTTTTCACAGGCCTAAACACGCAGCCGCCGCCTGCCATCCATCCCTTTGAGTGCTGTGGTCTTGATTCACCCTTTTAGAAGGGTTGAGAGTGGCAGTGTGACACAGAAGCCATTCTTCAGTATGAAAGGTTAGAAGTTATTCCCAAGAGATGACACTGTTCCCCGTGTCCTCCAGTTTCCATGGTTAAAACCCCAGCCGATCCACATTCTGCTTTTCTTCGGCGGCTTTAAATTTTACAAATCTCTAAAAACCAGGATGTCGGTATGTGGGAGAGTTATAAATGGCGATATCCTTCAGAGGAGAGTTAATGCAGCATCATGTTCCAGGTCTCTCACAAGGCTCTCGTGTCTTCTCTAGGATGTGGTTTACATAGGGAGAGGCGAATTCTAACCTAGGGTTAGTAAAGGGGTAAAACCCTGGGAGGGGAGTTGGGGTGGGAAGGGGCCTTCTTTAAATGTTTTGTTTTTTTTTTTTTTTATTTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCAGGGGGCCTTCTTTAAATACCTATCTGAAGCAGCAGGGTCACACTGCCTTTGCTCTTCCATGATCTTGGTGATCGCAAGGACACGTAGAGCCATAAGATAGTATTTGCGAATCACCCACAGCATCTTAGGAAGGGGGAACAGGGAAGGGCATCTTACTCAAGTTTACTCTATGGTATAACAGGAGCCTCTCTACCTCTACCTGAGTCGTGGCTGGTAGTCTTAACAGTCTTATAAGAGGTTCCTTGACCTTTAGCAGAATATTGGGTTCTAGTTGGATGGAAAGGTTCTCCTCTGTGAGGTGTACCCTGTGTTAGGGTTTTGGAGTCATCTAAGGAAAAGGTTCATATCACCGAAACTTTACAAATATATTCTGTGTCCACAGTTTCCCCCTGAACTGTATTTGTCGTTGATGATTTTTGAGACAGGGCTCCCGTGCATACCCTGGCCAGCCTGGAACTCACAGAGAGCCGCCTGACTCTGTCTCCTGATTGCTGGGATGAGCGTGCTTTGCCACACCCGATATTTGCTCTTCTTATATAAGTTGGGATTTGAGGTTTGAGTCCTTATCAGTCTGAAAGAGAGCGTAGACTTAGTACTGAAATATACATGCTGGTTTTATTTGGCGCTAGCCTAATGTCATCTATGTGCTGTAGCTGTGAGCCATATACGAACCTTTGGGAAATGCTCAGCTAGAAACAGAAAACACTGGCTCTTCAGGTCACTGGCAGGTGAAAGCTTTTATAGGGAGATGCATTATCTGTTGTTCGAGATGCTCATTTAGTTAGCTACTCCGACTTGCATTTCTAATCTCACCTTGGTTATATCTGTGTAAGGTTTCAATGCTTGCATATAACTTAATAAAGTAGAGGAGTGGGAGGGGGGTCGAGACAGGGTTTTATGTAGCCTTGCTTTGCTGCAGACTTGCCTTGTAGCCAGGGATGACCTTGAACTCCTGCTCCTCTTGCACTTAAAGGCTGGGATTACGTGCATATACTGTCACGTGAGGGTCAGTTTTTTTGTTTTTTTGGTTTTTTTTTTTATCTTTTTACCAATGGTTAAGGGGATAGTCGAGTCAGTGGGAAAGACTGGTTTCTACTTTGGGTCTGAGAGGATGTTAATTCGGTGAATAAAAAAAAAATATGCAACTTGTTCTCATGGTTACTATAGTAATGGATTAGAGTTCTTCTAGGCAGGATGGAATGGGGAGGGTTTTCCTGTTAACCACGAACGTCTTCAGGCTCTCTCGCCAGAGAGTTGGACCGTAAACGTGCACTGTTTGCCAGCGGATGGCGATAGAAATTAAAATCTTCAGGGCTGGAGGGCTGCACTTGGGGCACACACTTGAGAGACTGAAGAAGCAAGAGGACCATGGGAGTTCCAGACCTTTCTCAAGAAACAGGCTGGGGCCTCATGCGGCTGAGACCGTAGCTAGACTTAAACAATTAAAACAGGCAGTTTCACAGGAAGTACCGCTAACATCCTGAGTGGGTGAAGAGAGCTAGAACAGTGGGGTCCTGGATTTTCCTGAGGGCTATGCGGGAGATGGTCATTGTTCTGCGGTGCTGGGAATTGAAGCCAGAGGAGGCCTCAAAGGCCTAACAGGCAGCCACTGGGTTAGGGAGCTGCGTCCCAGTCCTTTAGTGGAATAGGTCATCTAGGTCAGTAGGCACACGATTTACAAATGTAGGCCTGATTATCCTTGGCTGCTTAAGAAAAATTACTTCTCCTTACATCTCAGTTTTCCCCTCCCTTTTCTTTTACTGCCTACCTCTGTCATTGCCCAACCCACAACCCCAGAGGTGGGAGGAAGGGGCTCGGAACACCAGCATCGCCAAGCTCAAGGGCACAGAGTAAGCGGGATGAAAGGGTCCTCGGGGGCAGCTGGGTAAGATAAGGGGGAGTTTTAGTAAGAGAGATGGGTTTGGCACAGATCCAACTCCACGGGAGACTTAAAAAATAATAGTTCAAGGAAATCCACACGGCCGGAAGCAAAGGACCCTGAGGAGAGAGGCAGAGTGTACAATTGCTTCCAATCCCGTCCCTGAGTGCTTCCAGGCTAAGGAGCAGCCATTTTTCTAGAACCGTTAACCAGAGTTCAGTTAGATTTGAAGGGACGCTTAAGGTTTTTCCAAGAAAACGTGTTTTTTGCTCAGTGTTGGTTTCTTGTGTAGTTGAGACGGCATGGGGGGAGGGGATTCAGTGGACAGCATTCTCCTTTCCGCTATAGCATCCACATGAATATTTAATGACAGAGGTCCCTCCCACCCCCCCCATGCTCCTTCACCCAAAATAGACTGGAATGAGACATTTGTTAGCTGGAAGGGTATCATCTTTAAGCCCAGCTAAGATCTTAAACTGTAAAAAGTCCCGTCGTTCTCTTACCTCTTGTCTTTTCCTAATGTGACCTGTGGGCAGACCCTAGGAACACAGCTCATGATTCAGACTTATTTGATTCTTTAAAAACCTTCTAGATTTTATGTGTAGTGGCGTTTTTTTTTTTTTTTTTTTTTTTGGGTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCGTGTAGTGGCGTTTTTAATCTGCATGTATGCCTGTGTACCATGGTGCCTGCAGAGGCCAGAAGAGGGTTTCAGACTCCCTGAATCTGGAATTAGAGGGTTGGTTGCTGGAACTGAACCCGGGTCCTTTGGAAGAGCAGTTAGCACTCTCAACTGCGTACTACCAGCCCCTAATTATCTTATATATAAATGTTTTTAGTCAGGTACTGTGTATCCCTGGCTGTCCCAGAACTCACTATGTAGCCTAGGCTAGGCTCAGACTCAGAAAGATCCACCTGCCTCTGCCTCCCAAGGGCTGGAATTATTGCTTATGCCACCATGCCCAGCCTTGATTATAATTCTTAACAAACTCTTGATTGTAATTTTTCTTCTCAGCCAAACTTATTTGAAGGCTGTACTTGTTTGAAAGTTAAGGTGCTCAGGTTCATTTTTTGACATAAGTGCAGAGTTCTTTTCATGTGATCTGAGTAGATATTTCAGGAAATCCCCAAAGCACCCACCAGGTTTGCTTTAACTTTGTAGAGCTGATCTAAATTGCTACTAAAAGATGGAGACCAGAAAATCAAGATGTAGCCAATACCTCCCGTCACTACAGTGCATTCTGGGAAGCAGCTCTGAAGCCAGGCAGTCACGACTGCATGTCCCGGTCGGTGCTGTTAATCCTGCAGCACAGTCAGCAACTAGTGAGACCACGGTGTGGGGGTCCCGTGCCTCGTCATGTGTGGGATGCCTCTCAGCCTTTCTCCTGCAGAGTTGTGTTCTTTAGGAGCTTACGTCTAACGAGGGAGGAAGAGACAAAAAAGGCTTGTGCCTGCTGTGTCCTGTAGCCAGGGTAATCTCTTCCGCTTTCCCTTGATGGCTTCTTTTCAGAGGCCAGAGAGTGTAAATCCGTGTTTTCCTCTGTGCATAGAAAATGATGAGAGGCCATGAAAAAAATCTGGTTTCTGAATTGTATGTGGTGCCGGGATCAAAGTTGGGGCCTCGTGTACCCCGGGCTTGCACTCTGCCACTTGAGCCGCACCCACAGCCCTGCTCTCTGGGTTTTGAAGCCAGTGCAGATTCTAATCTCGCCCCCTTTTCTTCAGTACTAAGTTTGCCCTTTCTGAGAGTCTGATGAGACGATTCACACTTGTGAAGATCTGGGTCAAGGGTTTCCCTGGCTGCCAATGTCCTTCAGAATTGAGAGACTCGAGCAGAATTTCCCAAAATGTGTTCCAGAGACGATTTGCCCCCTAACATACTCTGGGAGCAGTGGGTTCCATAATCAGGTTGTGAAACGCTGAACTGTTTTCTCCCAGCTTTTACCTTGACCATAAGTGTATTAAAAAAACCCCTAGGAGGTACTGATATACATAGTCTTCTAAACTCTTAACACAGCAGTCCTATTTTCATTCAAAAGGCTATTAATATCGAAGGAACTAGTATATTTAAGATATACTCTTGGGGACAGGCCAGACTATATTATCTCTGGGATTAACACTTGGGTCTGGCTTTGGTTTAGGCAAAGCCTATGCTCTTTCTGATCTAGTCTCCCGGTGATACTTCAGAGTACTATCCTGTGTGGTCAGAAGGGCAGTGAGCAGTAGCCTGGGCCAATGACTGCTGTGGCCAGCAGGGCTGAAAGTGAGGCTGTCACTCCCCTGGGAAGGTGCTGCTGCAAACTGATTGTTCTAAGAGTGACTGAGGGGCTGGAAGGGAGCAAGTGAGAGCATTGGCCTGAGCCAACAAAGAAAGACCAGGTTGGAGAGGCAGACTCAGTGCCGGCCAGTTGCTTGTCTGCAGTGAGCGTGCTATGTTGACAGACTTGCCAGCTCTGTCTTGGGACCACACTGCTGACTGCTGTTCTCCCCTGGGCAG
Seq C2 exon
AGTCCTCATGCTCCTGGCTAGCTGGTGGTGAGCAGCTTGGGGCCATCGTGGTTGGCTCCCCAAGGAGACCTTTGGAAGCCAATGGATGCGTTCTCGGGCTCAGGCCTCAAGAGGAAATTCGATGATGTGGACGTGGGCTCGTCAGTCTCCAACTCGGATGATGAGATGTCCAGCAGCGACAGTGCAGACAGCTGCGACAGCCTTAACCCTCCTACGACTGCCAGCTTCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019653:ENSRNOT00000026613:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.706
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]