HsaINT0043015 @ hg19
Intron Retention
Gene
ENSG00000141086 | CTRL
Description
chymotrypsin-like [Source:HGNC Symbol;Acc:2524]
Coordinates
chr16:67965001-67965778:-
Coord C1 exon
chr16:67965704-67965778
Coord A exon
chr16:67965105-67965703
Coord C2 exon
chr16:67965001-67965104
Length
599 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CTCATTAGCCCAATGGCCAGGCT
3' ss Score
-4.08
Exon sequences
Seq C1 exon
CTCCCAACCTCACATCTGCCACGATGTTGCTGCTCAGCCTGACCCTAAGCCTGGTTCTCCTCGGCTCCTCCTGGG
Seq A exon
GTGAGTGGGCCAGGACCAGCCCTGATTCAGCCCTGGGAGCAACTCAGCTCCCAGCAACAGCCCAGGGAAGGAGCTAGGCTGGCTGGAAGGGACGAAGGTGGACAGAGTGGGCAAAAGAAACAGGATATGCCAGGGCAGTGGAGCAGGGAACAGGCCTGCAGGGCTGGGAGGGGGCAAGAGGTGGGGTGGTCTCACAAATAGGACCAGAGATTGAGCCAGGCCCTGGAGCCCGGGAGGGTTTAGGAAGCTGAGACAGGAAGACCTGTCCATGTCTTTTAGAAAGAACCTTCTGGCTGCATGAAGGGTATGAACTGTTCAGGTCGGGAGGGGGCAGAGAGACCAGGGGTAGAGATGGGGAACAGCGGGGACTAGGCTGGAGACAGATGTAGGAGAACAGCAGGGCTGGGGGACTGGGTGGATAGGGATAACCAAGATAGCTGTGGGGCCCGAAGGTGCTTGCATGTACCCTGTTGGGGAAGGGGTAGTGCTGTACCCTCTCGACAGACCTCTCTGGGGTGCACAGCCTGGGGCACCCAAAAGGAGGTGGGGAAAGATGGGCTGAGGCATGGGAAGCAGGTCCTCATTAGCCCAATGGCCAG
Seq C2 exon
GCTGCGGCATTCCTGCCATCAAACCGGCACTGAGCTTCAGCCAGAGGATTGTCAACGGGGAGAATGCAGTGTTGGGCTCCTGGCCCTGGCAGGTGTCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141086-CTRL:NM_001907:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(14.2=51.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)