RnoINT0043262 @ rn6
Intron Retention
Gene
ENSRNOG00000019353 | Ctrl
Description
chymotrypsin-like [Source:RGD Symbol;Acc:621501]
Coordinates
chr19:37907006-37907714:-
Coord C1 exon
chr19:37907660-37907714
Coord A exon
chr19:37907110-37907659
Coord C2 exon
chr19:37907006-37907109
Length
550 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
CTCACCAGCCCTTTGTTCAGGCT
3' ss Score
2.38
Exon sequences
Seq C1 exon
ACAATGCTACTGCTCAGCCTAACCCTTAGCCTGGTCCTTCTTGGCTCCTCCTGGG
Seq A exon
GTAAGTGGGCTGGGACCGACCCTGACTGAACAACTTAGCACAACTTAGCTCCCAGCTCCTGCTCAGGGGCCCAGATAAGAGGCCAGCCTGGTTAGAAGGGAACAGGCAGCGTAAGCAAAGGAAGAGGAACCTTCAGGGCTAGGAGTAAGGAAAGAGCCAGGGACCAGTCTCACAAATGAGACAGGAGCTTGAGCCAGACATGAGGAGGCTCAGGAAAACATACTAGATGGGCATAGACTAACAACGCTTTCTAGCTGCATGGTAGACTGCTTGGGCCTAGAAAAATAAAGGGCATACAAGGACTTAAAGGGGAAAGTAAACTGAAAAACATTAGGACTAGGTTGGTAGATGTGACAGAATGCATAAGACTCAAAGACTGGTAGGGTGGGGTAACCAAGATCGCTGTGTATGTCTAAAAGGCAGTCAGGGGAAAGGCTAGTGAGTAATCCCCTTGGTTTGGACCCCTCTGTATATCTAGCTTGGGGGCACCTTGAGGAAGACATTAGGGAGAGGGAGGCTGGGATTATATCCTCACCAGCCCTTTGTTCAG
Seq C2 exon
GCTGTGGTGTTCCCGCCATCACACCTGCACTGAGCTACAACCAGAGGATTGTCAACGGGGAGAATGCAGTGCCAGGCTCCTGGCCCTGGCAAGTGTCTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019353:ENSRNOT00000026361:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(8.0=51.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]