DreINT0053250 @ danRer10
Intron Retention
Gene
ENSDARG00000068680 | ctrl
Description
chymotrypsin-like [Source:ZFIN;Acc:ZDB-GENE-040912-147]
Coordinates
chr15:37926372-37927575:-
Coord C1 exon
chr15:37927511-37927575
Coord A exon
chr15:37926476-37927510
Coord C2 exon
chr15:37926372-37926475
Length
1035 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CATTAATTTCCTTCTCACAGGCT
3' ss Score
8.77
Exon sequences
Seq C1 exon
GAAATTATAAGTCTCCAAAATGCTCTGGATCATTAGCTGTTTTGCTTTGGTGGCCTCCACTCTGG
Seq A exon
GTGAGTTTCTTTTGCAGCTTTCAATGAGATGGGTATACTTCAGATAATGCTTTTTTTAGTTTTTTTATTTATTTTTTGTCTAGTTTCTAGTCCAAATATCTCAACATTCTTAATTCGAAGCATTTTTTAGACAAGCAAAAAACATTGACTTGTTTTAGGAAATAATATGCCAAAATTAAGTGAGTTTTTCCTTAAAACATGGAAAAAATAATCTTGTTTTTTCTTTTGACATGGTTATTTTGCTTGTTTTAAAGAAAAAGAGCCTAATTTTGACATATTATTTCTTAAAACAAGACATATGTTTTGCTTGTCTAGAAAATGCTTCTTGATTTAGGATTTCTTTATTTCTTTTTTATTTTTTGATATTTAGAATAGAAACGACAAAAATATCTAATATGTCAACATTTTACAGCAATAAGATAAATTTAGAACCAGAGAATTAAAATTTATTTTAAAATGAACTTGCAGTTAAAGGCTAAACTAAGAAAAATACTAATAACTTAATAATTCGGTCACATTTTATTTCGATGGTCCGTTTGTTACATTGCATCTACATGTCAACCAATTCTCAATAGATTTTAAGTAGACTGTTGGTTGGGTAAGGGTTAGTATGAGTTGACATATACTTGCTAAGTTTCTTATAGTCAGTTAAATGTCTGTTAAAGGAGCAGTATCAGCAGATAATAAGCAGACAGTCTACTAATACTCAAATGGACCAACAAAATATAGTGTTACCCTAAATTCTTTAGTCTTTGCCAAGAAGACAGTACAGTACATCAAATTTTACTAGTTATTACTTGTGCAATTTAAATATATTACACTGCTTAAAGTGTAATTTAAAGACTTAACTGGGTTAAATAGGTTAACTAATCAAGTTAAGGTAATTAGGCAAGTCATTGGACAACAGTGGTTTGTTTTCTTTTAATTTAGCAGGACTAATAACTCTGACTTCAACGTAAAGTGTATCAGAAGTTCAGTTTTAAGTTAAAAAAAAAAACTTGTTTGTCTATAATTCCATTAATTTCCTTCTCACAG
Seq C2 exon
GCTGTGGAGTGCCAGCCATTAAGCCTGTTATTAGTGGCTACAACAGAATTGTGAATGGAGAGAATGCAGTGTCTGGCTCCTGGCCCTGGCAGGTCTCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068680:ENSDART00000099425:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(10.1=51.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]