HsaINT0043552 @ hg38
Intron Retention
Gene
ENSG00000138161 | CUZD1
Description
CUB and zona pellucida like domains 1 [Source:HGNC Symbol;Acc:HGNC:17937]
Coordinates
chr10:122841178-122846220:-
Coord C1 exon
chr10:122845762-122846220
Coord A exon
chr10:122841329-122845761
Coord C2 exon
chr10:122841178-122841328
Length
4433 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCATCTGTGATCTCTAACAGGCA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GCTCCCTTCTCAAAGCAGAGCCCTGAAGACTTCAATGATGTCAATGAGGCCACCTGTTTGTGATGTGCAGGCACAGAAGAAAGGCACAGCTCCCCATCAGTTTCATGGAAAATAACTCAGTGCCTGCTGGGAACCAGCTGCTGGAGATCCCTACAGAGAGCTTCCACTGGGGGCAACCCTTCCAGGAAGGAGTTGGGGAGAGAGAACCCTCACTGTGGGGAATGCTGATAAACCAGTCACACAGCTGCTCTATTCTCACACAAATCTACCCCTTGCGTGGCTGGAACTGACGTTTCCCTGGAGGTGTCCAGAAAGCTGATGTAACACAGAGCCTATAAAAGCTGTCGGTCCTTAAGGCTGCCCAGCGCCTTGCCAAAATGGAGCTTGTAAGAAGGCTCATGCCATTGACCCTCTTAATTCTCTCCTGTTTGGCGGAGCTGACAATGGCGGAGGCTGAAG
Seq A exon
GTAAGAAAATTGAACCAGATTTATTCACCAAAACAGAGAAGTTCTTCTCTTAAGAGGCCTCTTTCAAAATTTTTCAAAGTGTTTATATCTGTTGGCCCCAGTTCAGAGAAAAATGTACTCTAATGCTCTTGGAGGGGATTTTAAATTAGTTCTAATTTTATTTGGCTCATCTGACAATGTCCATAAAAATATCAAAAGTGTATAGAATTTTACTGAGTAATTTACTGCTAAGAGTTTATGTTTTGGAAATAAGCATAAAAGTGTCCAAAGATATATGTATAAATATGTGCACTTACATAATTGTAAACTACAACATGAATTTTCATTATTTCTTACGGTAAATCCATAAAATGGAACACTCTTTTTTGCAACTTAAAAAAAAATGATGGCTGGGGGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGATGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGAGAGGTGGAGGTTGCAGTTAGCTGCGATCATGCCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCATAAAAAAAAAAAAAAAAGACTCTGATCTATAATGTGTCCATAGACCACATTAAGAGAAAAAAGAGATCTGAAGTTTGTGTACAATATGATGGTTCTTATGTTTGAAATATATACATTCAAGCATTTTAAATGTCTAGAAATAGAAGAGGAAAGGAAAAGGAGTGGAAGAATTTACACCAAGGTTTTAGTGATGATTGTTTCTGGATGGATGGGGTTATGGGAGTATATGGGAGAATAAATAAAAATAAAGCTTTGTTCCTATGTAGGTGGGGTTTTTGACCATTAGTCAAAATCTTGGTGGGATTTTGAATTAGTACTAATTTTATTTGGGCCCATCTGACAACATACATAAAAATATAAGAATTTACCAAATAATTTTTAAAAATTTTATAGAAAAAAATTTTCACTATGTTGCCCAGGCTGGTCTCGAACTCCTGAGCTCAAGTGATCCACCCGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGTCACCACGCCCAGCCCCTTACCGGGTAATTTCACTGCTAACAGCTTATCTTTAGGATCCAGTTATTTTTCCTCTTCCCCTTTTCTCTTTCTTCTCTTCTTTCTCCTTTTTAATAACAGCTTTATTAAGATATGATTAACATACCATAAAATCCACCATTTTAAAGTATACAATTTAGTGTTTTTTAGTATATACACAGAATTGTGCAACAATCACCACTATCTAATTCCAGAACATATTCTTCACCCCCAAAAGAAACTGTCTCAGGCTCAGCATGATGGCTCAAGCCTACAATCCCAGCACTTTGGGGGGCTGACATGGGAGCATTGCTTGAGGCTGAGAGTTTGAGACCACCCTGAACGACGTAGTGAGACCTCGACTCTACAAAATTAAAAAAAAAATTTTTTTAGCCAGGCATGGTGGTACATGACTGTAGTCCCAGCTACTCTGGCGGCTGAGGTGGGAGGATCACTTGAGCCCAGTAGTTTGAGGCTGCAGTAAGCTATGATTGTGCCATCTCAATCCAGTATAGGTAACAGAGTGAGACTCTGTCTGTCCCTCTCTCTATATATATATATATTTATATATAGTCTCTCTATATATATAGTCTCTCTATAGTCTATATATAGTCTTTATATAGTCTATATATATAGTCTCTATATATAGACCAATGTTTTATATATATATAAATATATCTAACAATATATATAACTGTATATTATATATAGACTAATGTGATGAATATTAGTGTACAAGTTTCTGTGTGGACATATATATATATATATATATATGTATGTATATATATGTATGAAGAAAGTCTGTATTCACTACCATTCACTCTCCATTTCTCCTGATGTCTCCAGCACAAGGAAACCACTACTCTACTTTCTGTCTCTATAAATTTACTTATTCTGGATATTTCACATAAATGAAATCATGTAATATGTGGTATTTCACTTAGCATAATATTTTCAAGGTTCGTATGTATTGTAGCATGTATCAGTACAATCAGCCCTCAGTACCTGTGGGTTCAGCATTCATGGATTCAACCAACCATGAATTGAAAACATTTGAAAAAATAAGGGTTGGTTACAGAACATGTACAAACTTTTTTCCTTGCTGTTATTTCCTAAATAATATAGTAAACAACTATTTACACATCATTTACACTGTATTATAAATAATCTAGAGATGTTTTGAAGTGTACAGGATGTGTGTAGGTCACATGCAAACACTGTCATTTTACATAAGGGACTCCAACATCCATGGATTTTGGTATCCACAGGGGGTCCTGGAACCAATCATTCGTGGACACCAAGGGATGACTGTACCTCATTTCTTTTTATTGCTGAATAATATTCCAATGTATGGATAGACCATGTTTTATTTATTCATCAATTGATGAACATTTGGCTTATTATGACTAATGTTGCGATGAATATAGTATACAAGTTTTTATGTGGACATTTGTTTTTATTTCTTTTGGGGATATGCCTAGCAATAGAATTGCTGGGTTATGATAACTGTATGTTTACTCTTTTGAGGAACTGCCAGACTGTTTTCCATGGCAGCTGTACCACTTTACAATCCCATAAGCAGTGTATAAGCATTCCAGTTTCTCCATGTCCTTGTCAACACTTGCTGTTTTCTGTGTTTGACTCTAGCCATCCTAATGCATGTGAAGTGATATCTCGTTGTGGTTTTCATTTGTATTTCCCTGATGACTAATGATGCTGAATATATCTTTACATGCATATTGGCCATTTATAGATCTTCTTTGGAAAAATGTCTATTCTGGTTCTTTGTCCATTTTAAATTGGATTATTTGCCTTTTAGTTATTGAATTGTAAGAATTCTTTATACATTCTAGAAATCAAGTGTCTTTTAAAAACCATCCTTTTTTTCCCAGGTTGATCTATAAATTCAGTGCAATTCCAATACAAATCCCAGTAAGAATGTTAAATAGATACAGACATGCTGACTCTAAAATTTATTGAAAAAGCAAAGGAACTGGAATAGCCAAAAAAATTTTGCAAAAGAACAGTAAAGTTGGAACAGTCATGTTACCTACAGTAATAACATAAACTACAGTAATCAAGCAGGTGTGGTTTGCCAAAAGGATAGACAGAGAAAATTGAAATAGAATAGAGTTCAGAAATAGATCCACACAAATATGGTCCTTTGATTTTTGACAAAGGTGCAAAGGCAATTTAATGGAGAAAGGACAGCCTTTTCATCAAATGGTCTTGGAACAATTGGACACCCATATGCAAAAAATGAACTCAACCTAAGCCTCATTTCTTACACATAAATTAGTTCAAAATGGATCATAGATCTAAATGTAAAATGTAAAACTATAGTATTTTTAAAAAGAAAACATGGGAGAAATCTTTGTAACCTGGGGTTGAGCAAAGAGTTCTTAGACAAGACACCAAAAGCACAACCCATAAAAGAAACTATTACTAAATTGGACTTTATAAAAGATTTAAAACTTTTGTTTTGGGAAAGACACTGTTAAGAGGATGAAAAGACAAGATACAGATTGGGAGAAAATATTTTCAAATTGCAGATGCAACAAAGGACTTGTATTCAGCATATATAAAAAACTCTCAAAACCCAATCATGAAAACAAAAAGCCAAGTTAAAAAAAAAAGGGCAAAAGACTGAGAGATACTTACCAAAAAGGATATATAGAAGGCAAATAAGAACATGAAATGATGTTCAATGTCATTAGCCATTAGGGAAATGTAAGTTAAAACCATGATGGGATGCTGCTACACATCTGTTAGAATGGCTATACAAAGCAATACAAAAACCTGACAATAGTGTGTGTTGACAAGAATGTGGTGCAACTGGAACTCTCATACATCATTGGTTGGATTGTGAAATAGAACAGCTACTCTGGCAAATGGTTTGGCAGTTTCTTATGCAGTTAAATATACACTTAACATATGACCTGGTGATATCACTCCTAGGTATTTATGCTAGAGAAATAAAGACACATGTTCATATGGAAACCTATTAAAAATACAAACCATCCTTCTTCGGGTCCTAATATAGTCTCTATATGTAGAGAAGTTAAAAATACTTCTCCTCAAAGGGTTCAAGACGGAGAAATCAACTGCTTTTGACTTACTTTGGAGAAAGCTAAGTACCATCCACAATTAGCTGCCTACTTGTATGTATATTACATGTGAGAGGTAGATTCCTAATCTCTCAGGGAGGGGAAAGGGCCTGTTGACTTTCCTGAGTGCCATCTGTGATCTCTAACAG
Seq C2 exon
GCAATGCAAGCTGCACAGTCAGTCTAGGGGGTGCCAATATGGCAGAGACCCACAAAGCCATGATCCTGCAACTCAATCCCAGTGAGAACTGCACCTGGACAATAGAAAGACCAGAAAACAAAAGCATCAGAATTATCTTTTCCTATGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138161:ENST00000368904:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(29.8=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development