MmuINT0044250 @ mm9
Intron Retention
Gene
ENSMUSG00000040205 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:MGI Symbol;Acc:MGI:1202881]
Coordinates
chr7:138463553-138465806:-
Coord C1 exon
chr7:138465480-138465806
Coord A exon
chr7:138463704-138465479
Coord C2 exon
chr7:138463553-138463703
Length
1776 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CCAACTATGGTATCTACCAGGCA
3' ss Score
4.3
Exon sequences
Seq C1 exon
ACGTAGCTGCTGAGCCCTGTGCAGAATCGGGCTGGCTGGCTTATAGCCCTCTGAGATGTGACCTGGAAGACTGAGCCCAGTGCCAGGAACTGCTGGCCAGGTTGCAGCTCCTCAGCTGTGGAGTTCTCACCAGCACCACCCCTGGGATGGCCAAACTGACACGTTTCCCTAGATACCAGGAAGCTTACAAAACTCGGAGAATTATAAGAAGCCTGAGGGTGAGGGCCCTGAGGCACCCTGCGAAGATGGAGGTCACTGGAAGGCTGTTCATCTGGGCTATTTTAGCTGTCTCCTGTGGGGCACAGCTGAATTCTACAGAGGCTGAAG
Seq A exon
GTAAGAAAATTGAACCAGATTCTTCAACTCAAACAAAGAAGACTGGCTTTTACCAGGCTTCTCCCGAAACTTTGAAAGCTTTTGTATCTGCCACGGCCCTCAATACAGAGAACTCACCCTTGTGTTCTCTGGGCTTCATAGTCATCTCATTAAGGCCCATATGGCCATGGTCATTGAAATAAAAAAAAAGGCACACACAATTTCACTTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTGCCGGTTGTGGTGTCACACACCGGTAGGATTGGCTGAAGGAGGCAGAGGGCAGGAGGATCACGTGTTCGGGGCCAGCCTGGGCTACACAATTTAACTTTTAGTGCATATCTTAGGAAAATGATTCCTACACGAATAGATATTGGCCTGATTCTTATAAAAAAAATGTAAGTTTCAGGTGCTGTTTTTTTTTTAAAGGGCAAACCAATAACAGAGAAATAATCTGTTAAGTTCTAAAATATTACATCTACAAGAAATGGTCTCTGTTAGGAGGGAAAATGCCTGAAGTTTTACAATATGACACCATTTATGTCTAGAAGTATGCACAGAACATCTTTTAAATCAAAAAGAGAGGAGGGAAGGAAAAGACAGATGAATTTGCAGAAGGTTTTAACAAAGATGCTGCCCCTGGGTGGGTGGGACTGTGCCATCTCTTCTGTTATCTTTGCTTTCTTTTTCCTGACAAATGTAGACCTCGTATTCTTAGGTAAAGATAGATAGATCGTTCATTCATTAGCCGTGGGTGAAAGAGAACATACCGAGGTTTCTTTCTAAGTAACGTAGGGGTTTTATCAGTCTTTTTTTGGAAAATGTGTCTATTCTTGTCCTTTCTGGACAATGAGAGAGGCAGACAGACAGACACACACGGAGGGTGGGAGGAAGAGAGGGAGAGGGAGAGGCAGAGGGAGTTAGGATCTGTCTACAAATCTCAGACTGGCCTCTTTGCATGGGAGCCTCCTCCTTCAGCCTTCTGAACGCTGCAGTTACAAATGTATGCCTCCCTATCTTCCTTTCCTCATTTCTTCTTTGGTTTCTGGTCTTTAACTTATTTTTTACATTTACTTATTGTGTGTGCTCAAGTACGCATGTACTCACATCTTAGAATACTCAAGTGAAGGTCAGAGGATAACTTCCAGAAGTTGGCTCTTTCCTACCTTGCAGGTTCTGTGAGCTGGATATGAGTTGTCAGCTTTGGCAACGAGGGCCTTGACCCACTGATCCACCTCACCGGCCCCATCATTTTTGACCAATAATTTTTTTGTTATATAAAACACTTTTTTGAGACAGAGTTTCAATGTGTAGTCCTGGGATGTCCTGGAACTCACTCTGCAGAGCAGGCTGGTCTTGTGCTCACAAAGGTCCGCCTGCTTCTGCCTCCCAGCCACTGGGATCAAAGGTGTGTGCCACCGCTGCCAGCTAACAATTTTTAAATTTAAACCTATTTTGATCATATTCTTCCCTTCCTCCAAGTCCTCCCAGATCCTTGTTTCCTCCCTATCCACCCCACTTTAAGTTCTTTCTCAAAACAACCCGCAAGCCCAATACAACAACAAAATCCTAAAAACCTAGAAAGCAAAATACATCAACACCCTAAGGGAGAGAAAACTATAATCAAATAAAAGCACACAACAAATTGTGGAGTTTGTTATATGTTGGGCAACTACTTCCCCTTCCTGTGGGAGGTTGAGTCCTAGTGCCTGCTGGGAGACAGGGACTGCTCTTTCCTTAGTGCCAACTATGGTATCTACCAG
Seq C2 exon
GCAAATCAAGATGCACAGCCAGTCTGGGAGGGGCCAATCTGGGAGAGACCCATAAAGCCCTGGTCCTACAGCTCAGTGCGAATGAGAACTGCACTTGGACCATAGAGAGACCTGAAAACAGGAGCATCAGAATCATCTTCTCCTACATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040205-Cuzd1:NM_008411:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043115=CUB=PU(30.1=54.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTCTGAGATGTGACCTG
R:
ACCAGGGCTTTATGGGTCTCT
Band lengths:
347-2123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: