HsaINT0043553 @ hg38
Intron Retention
Gene
ENSG00000138161 | CUZD1
Description
CUB and zona pellucida like domains 1 [Source:HGNC Symbol;Acc:HGNC:17937]
Coordinates
chr10:122839017-122841328:-
Coord C1 exon
chr10:122841178-122841328
Coord A exon
chr10:122839232-122841177
Coord C2 exon
chr10:122839017-122839231
Length
1946 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CAGTTGTGTTTTTTCCACAGGCT
3' ss Score
9.6
Exon sequences
Seq C1 exon
GCAATGCAAGCTGCACAGTCAGTCTAGGGGGTGCCAATATGGCAGAGACCCACAAAGCCATGATCCTGCAACTCAATCCCAGTGAGAACTGCACCTGGACAATAGAAAGACCAGAAAACAAAAGCATCAGAATTATCTTTTCCTATGTCCA
Seq A exon
GTAAGTAGAAGCTTTAGTTTCCTAATAAGGGATATCGAACTCTGACCACATTGGGGTGGGTAGGGGGACTCTCTGTAGAAAGAATTCAGCTGCTGCTAGAGGTGGTAGTGACACTGACAACCATCGTGATGATGATGGTGATGAGGATGATGGCTGATAGTCACTGATGATGGCTGTGTGCCCGGCACTGGCTCACAGAGGTCCTTCAAGGTCAGCACTATAATAGTACTACAAACACAACAAGGTTGAGAACTTGTCTGAGGTCACACAAATAGTGAATAGCATGACCAGAGTTAGAACCTAGCTGGTCTAGTTCCAGTTTCTTGGCCTTAAAACACTAAACTTTGGTTCCAAATTTTTCTATGCATTTGAATCAGTGGAGGAGCTTTCACACATCCAGACTCCCAGGCTGTACACCATATGATTAGATTATAATCTCTGGGGGTAGACTCCAGGCATCAATATTTTTTATTTTATAGATTTTATTTTGAAATAAGTATACATTTATAAGTGCTTTTTATAAGTGCCCAGGTGACCCCAGTGTGAGGCCAAGCTGAGAACATGACTCCGCCCTGCAGAGACGCTCAGTGTTTCCTATCTGCCTCTAGTTAATCCTCTCAACAACGCTCTGGGCAGATGCAGTCTAATCCCCATTCTATAGATAAGAAAACACAGAGAAGTCACCAGGTCCAAGACTAAAAAATAATAAAAATGGGATAGGAACTGAATCCAAGCAGCCTGGCTCCAGAGCCCCCCTCTTACGCCTGTCCCAGTGGTTCTTACACTTGACCATACATCAGAAGCCTGTGGCAAGCTTATTAAAACACAACTGCTGGGCCCCACCACCAAAGTCTCTATTGTCTTATTCAAATGGAGTGTGTGGGACCTGAGAATCTGCATAGCTAACAAATGCCCAGGTGATGTTGATGCTGCAGGTCCAAGTACCACACTTTTGAGAACCATAGCCCTGTACCACTGAAGTTGGAATTTACTTTATCCTTCAAAGAAGCAAAAGAGGCCTCAAATTTCCTGGAATGGTTGCTGAGAAACATATATGCTATTCTTGCTGTGTAAGAAGAGAGGGGAAGAGAAATTGTGGGAAGAGCAAGGGAGGCGAGAAATTAACATTTAACATCTATTGAACACCTATGTGCCAGGCCTGTGGCAGGTGCTTCATATTCAGAATATTATAAACTTCACACAGTAATGAGAAGTAGGCTGTGATATCCCCATTTTACAGATGAGAAAACTGAAGCCAAGAAAGGTTAAATCACTTATCTAAAGTTATACAGCAGGTAAGTGACTAAAGTGGAAAGAGAACCCAGATTTCTCTACCCTTGTCTTACTTCCTATAATTTTGGACATATGTCCTCTGAGGATATTTGGAGAGACCCTGTCAGAATGTGCAGCAAACTACAACCCTGGGCTGTCCTGTCCAGTGCAGGGCATGGGACTGTCCTTCAGAATGAGGAAGTGGTGATACAAGGGAAGGAAGGAGCAACTAGGGAGGTGCTAAGGTTTGCTTTTCCTTGGGAAAGGTGGCTATGGAAGAAGAAGAGTTGCTTCACCTTTCAACAGCCTTGGATATCAAGTGTCAATGGGAAACAATTCTAAATAAGAAGGTTCATCAAAGAGTTACATGGACATGGGGAACAGGAGAGATGGAAACAGGTAGAAGGAAAGGAATTCTGATTCCAGGCGCATCCTCATCATTTACTTGATACAAGACATAGGCAAAGCAGTTCATCTCCCTGAGCCCATTAAAGTTGACAGTTTGTGGTTTGATGTTGAGGATGGTGGGGTTGGTGATTGGTCTTGGAGAGGTTTAAATGAAAACAGATGTGCCACCACTTTGTAAATTTACATGCCTAGGTGAGCAATTGACTGCTCTGCAAACCCCCTTTGCTTGTGACACTTCTTCAGCCACAGTTGTGTTTTTTCCACAG
Seq C2 exon
GCTTGATCCAGATGGAAGCTGTGAAAGTGAAAACATTAAAGTCTTTGACGGAACCTCCAGCAATGGGCCTCTGCTAGGGCAAGTCTGCAGTAAAAACGACTATGTTCCTGTATTTGAATCATCATCCAGTACATTGACGTTTCAAATAGTTACTGACTCAGCAAGAATTCAAAGAACTGTCTTTGTCTTCTACTACTTCTTCTCTCCTAACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138161:ENST00000368904:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(29.8=54.9)
A:
NA
C2:
PF0043115=CUB=PD(69.1=89.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCTGCACAGTCAGTCTA
R:
AGGAGAGAAGAAGTAGTAGAAGACA
Band lengths:
354-2300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development