MmuINT0044251 @ mm9
Intron Retention
Gene
ENSMUSG00000040205 | Cuzd1
Description
CUB and zona pellucida-like domains 1 [Source:MGI Symbol;Acc:MGI:1202881]
Coordinates
chr7:138461452-138463703:-
Coord C1 exon
chr7:138463553-138463703
Coord A exon
chr7:138461667-138463552
Coord C2 exon
chr7:138461452-138461666
Length
1886 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CAGGTGTGTTCTGTTCCCAGGTT
3' ss Score
8.88
Exon sequences
Seq C1 exon
GCAAATCAAGATGCACAGCCAGTCTGGGAGGGGCCAATCTGGGAGAGACCCATAAAGCCCTGGTCCTACAGCTCAGTGCGAATGAGAACTGCACTTGGACCATAGAGAGACCTGAAAACAGGAGCATCAGAATCATCTTCTCCTACATCAA
Seq A exon
GTAAGTAGAGGCTACAATTTCTCAAGGAAGGAGCTGACTCTAGCCATGTTGGGGTGGGAGATGAGCTCTCTGAAGAGGGGACTCAGCTGCTTCCGGAGGCTGACGTGATCCCCATGATGATGGCAGTAACGGTTATGGCCCCTGGTGATCACCAAAGACTGGAATGCAAAAATCTGGGTCATATGGTGTCTACGAGGCCAATGCCAGAGCTACAGGCACAAGGAGCTTGTTAGCTTGTGGAGGTTCATCAAAGAGTGTACACATCGATCAAGGTTGGTACCCAGCTATTTACTGCTAGACTGTAGGTCTTAAAATCTTAAACTCTGGCTCCAAATTCTGGTCTCTGTTAGAGCCATAATGGAAGTTTCCTAGGGTGCACCCTGAACAGTTAGATCAGAGTCTCAGAGGATGTGACCTAACCTTGATAGTTTTTGAAATGCTATTTTAAAAGCAGCATACATGTACTGTATGCCTTGATGGTACCATGCTAAGACCTGAGACTCTGTTCAACAAGGCCTTGGGACTTCATAAGATCTGCCCCAACTGATTTCTCAACACCCCTCTGCAAAAGGTCCAACCTAATTCAGTAGATACGAGAGCTCAGACAAGCCACTTTCTGGACTAAGGCCACTAGTCCAAGGGAATGGAATCCCAGCATTCTTGCTCCAGGACTCCTATTATATAAGTAGATGTTCTTGCTCTGCTCCATAGCTGTCAGATTCACCAAGAGGGCTCATCAAAGTGCACATGCTGGGCTGGGGTGGGGTCTATACTATCTAATTTAAATAAGATAGGTGGAGCCTGAAAAGCCTGCATAAGAGACATTCTCAAGTCACTCTGATCCTGCTGTTTCTGCCACCATACTTGGAGAACCAGAGGGCTCTACGTCACAGAAGCTGGAACTGACTGACCTTCAGTGAAATGCGAAGACAGCAACTCATTGACTTTCTGGAACACTGGAAACCTATACCCCCTCCCCCATTTTTTTTATCTCTCTCTCCCTATATATGTATCTCCATATATATATATATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAGAGAGAGCAGGATTGTGGTTAGAGCAAAACTCAATAGAAAGAAGTCATTTATTGGGGCAACTTCTTGTGTATGAAGCCCATGGAAGGTTCATCATGCTAAGATGGCAAAATAAAAAACCTTGTACAGAAGAGGAGAACAGGCCAAGCATGGTAAGTTCCTGGTCCAAAGCTATATATACATCAGGGAAGCGTTTGAGGTGGAAGGGAGTTAAGATTCTATTCTTAGACATAGATCCTCTATGGGTGTTTGGAAAGAGCCTGACGGCGTGCACAGAAAATAGAAATCCTGGGCTCCCTGTTCAGTGCAGAGCATTGGACCACCCTCCAGAATGAGCCTTTGGTGGGGAGGAAGAGGCAGCTGGGGGATGCTTCACCGGGAGGTGGCCATGGAGGAGGAGTTGTTTTTTCAGCAAGCTTAGATATCAAATATCAGTGAGGCTGGATTCTAAATTAGAAAGATCTATACTAAACAGTCACCATGCGGTCTCAGGGAACAGGGGCGATGGAAGGGGGAGGGGGAGGGGGAGGAGGAATGCAGCCCCGAATTCTAGGCCCGTTTTTGTTCATTTACTAAGTATAAAGTGCTGCAAGTTAGTTCACTTTCCTGAGCCCATTAAGATTGTGGTTTGATTGATTTTGAAGAGGGATGGAGCTCATGACTGTTTTAAATGAGCCAGATTGCCCTCACTTAATAAACTCTTGCGCTAATGCAAACCAGGAACAATGCCTTGGAAAAGCCACTTTGCTAGTGGCTCTTCTCCAGCTACAGGTGTGTTCTGTTCCCAG
Seq C2 exon
GTTGGATCCAGGCAGCAGGTGTGAAACTGAAAACATTAAGGTGTTTGATGGAAGCTCCACCAGTGGGCCTCTGCTAGGGAAGGCCTGCAGCAGAAATGATTTCGTGCCTGTGTTTGAATCATCATCCAACTCGATGACATTTCAGATAGTCACTGGCTTGACAAAGTTCCCAAGGAGTGTCTTTATCTTCTACTATTTTTTCTCCGCTGCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040205-Cuzd1:NM_008411:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(30.1=54.9)
A:
NA
C2:
PF0043115=CUB=PD(68.8=87.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAATCAAGATGCACAGCCA
R:
AGAAGATAAAGACACTCCTTGGGA
Band lengths:
342-2228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: