HsaINT0044210 @ hg19
Intron Retention
Gene
ENSG00000197838 | CYP2A13
Description
cytochrome P450, family 2, subfamily A, polypeptide 13 [Source:HGNC Symbol;Acc:2608]
Coordinates
chr19:41600150-41601005:+
Coord C1 exon
chr19:41600150-41600337
Coord A exon
chr19:41600338-41600863
Coord C2 exon
chr19:41600864-41601005
Length
526 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTG
5' ss Score
4.05
3' ss Seq
ACCTTCCTCCTCCCTCCCAGGGC
3' ss Score
10.8
Exon sequences
Seq C1 exon
CCAAGGTCCATGAGGAGATTGACAGAGTGATCGGCAAGAACCGGCAGCCCAAGTTTGAGGACCGGGCCAAGATGCCCTACACAGAGGCAGTGATCCACGAGATCCAAAGATTTGGAGACATGCTCCCCATGGGTTTGGCCCACAGGGTCAACAAGGACACCAAGTTTCGGGATTTCTTCCTCCCTAAG
Seq A exon
GTGCTGTCTCCCCTCCACCACCACCACTCAGACTACGGGGACTTCCAGCCTCTCTCTGTGTCCCCAGAATCCTGCCCCCATTAGTGTTCTAGACTCTGTCCCACTCCCTCAATCAGTCAAAAAAGACTTCCCCAACCACCACATCTGTTCCACCTTTCCACTTAGACAGTCCTGAGTCCTGCATCTCGCCAGACTCTTTGTGTCAGGAGAATACACCCCATGTTCCCAAACTTCCTGTCTTAAGAAACAGAAGCCCCCTTTCCATTAGGCCTTTTGCCTTAGGGACACAAATCTCAGGTCCCTCAAACACCCTGCCTAGTGGAACATGGACCCCATGTCTCCCAAACTTCCTGTTTCAGAGACATGAAACTTCTATCCCCCAAAGCTCCTCCCTCAGAGGTCCCCAACTCCTCCATGCCTGCCACTCCCCTCACCTGGGGCACCCTAGTTCCCCCTGCAGCCCCTGTGTACTTTCACCAATCCCCCCAACCTGCCTCATTACACACACCTTCCTCCTCCCTCCCAG
Seq C2 exon
GGCACTGAAGTGTTCCCTATGCTGGGCTCCGTGCTGAGAGACCCCAGGTTCTTCTCCAACCCCCGGGACTTCAATCCCCAGCACTTCCTGGATAAGAAGGGGCAGTTTAAGAAGAGTGATGCTTTTGTGCCCTTTTCCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197838-CYP2A13:NM_000766:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.5=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGTCCATGAGGAGATTGAC
R:
CGATGGAAAAGGGCACAAAAGC
Band lengths:
330-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)