HsaINT0044268 @ hg38
Intron Retention
Gene
ENSG00000138115 | CYP2C8
Description
cytochrome P450 family 2 subfamily C member 8 [Source:HGNC Symbol;Acc:HGNC:2622]
Coordinates
chr10:95036773-95039038:-
Coord C1 exon
chr10:95038897-95039038
Coord A exon
chr10:95037310-95038896
Coord C2 exon
chr10:95036773-95037309
Length
1587 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
CCTTTCTTTGTTATCTTCAGGAA
3' ss Score
11.45
Exon sequences
Seq C1 exon
GGCACAACCATAATGGCATTACTGACTTCCGTGCTACATGATGACAAAGAATTTCCTAATCCAAATATCTTTGACCCTGGCCACTTTCTAGATAAGAATGGCAACTTTAAGAAAAGTGACTACTTCATGCCTTTCTCAGCAG
Seq A exon
GTAATAGAAACTCGTTTCCATTTGTATTTAAAGGAAAGAGAGAACTTTTTGGAATTAGTTGGAATTTACATGGCACCTCCTCTGGGGCTGGTAGAATTGCTATTTGTCCATGATCAAGAGCACCACTCTTAACACCCATGTGCTCCACCCTCACAATACACCATCATTATTGGGCCAGATAGCGGGGCTTGCAGGAGTTAACTCTGTTGTTCCCAATTGAGAAAATGAACATCTTGGTTTGACTGAACTCTGCCACTAGATACATCACTAAGGCACCCAAGAGCTCCTCCTAGAAGGTAAAATTCATCTGATCTTTCCTTACCTGCCTTGACAAATGTATCTAAGTCCACAACTGCATTGAGTGTCTTCTACATGGTGTCTGTCACCTCCCAGGCTGAGCTCCAAGGGCACAACTTTCAATGAGAACAGAGGCTCACTCTTGAGTTAGGGAAGAAGAGTAAACAGGTCATTGTAATTTAGTCAGACCAGGACTGTGAGAGAGGAAAGCACAGGCCCTTGGGTAGCGGCTAGAGGGGGACTCTGCATGCTTCTTGCTCTCTCATATAACACAGTGAGGCATAAAATGGAGTAAGCAACTCAGAGGATGTTTCATGTGCTTCAAAGGAGGTGATAAAATTTAAGGGAAGCTAAGAGGTTACATAAGCTAAGAGGTTATTTTGCAGTGATTCCAGAGCACCCTGTCTTCTTCCAATCATGATCATATATCCTGGATACTTGCTTTTCACACCTGTGTTTTGTGTGCTAAGTCTCTGGCCATGGAATCTCCTTCCTTTATTCTTTGATCTTTTATGTCTGCTTTATATTTGGCACTGTAGATACCAACATGACAAGGACAGAGACCTTCCTTCAAGAATTCACATTTTACCACAATAGATAAATAAATACAGAATTACGATTCCTGGTAATCTGTGCTTTAATGAAAGCATGAGTATGCTGTTGAGGAAAACCAGAGAGCATAGGATTTGATTACTTGAGGGGATTGTAAAGAGTGTGAAGATGAAATGAAATTGAACCTATGTCCTGAATGTAGCCTAATAAAGATGTATCTTAGCCAAAATGAACAACAGGATATGAAACTTGAAACTTCATGGTGTGTTCAAGATTGATGAAGAGAGTGTATGACCAGAGCTGAGAACAGATTATGTGAAAAGTGGAAGGAAAAGTCATGGAATATCAGGCTTGGAACAGGAAACAAGAATGTGCATGTATTTCCATAATGACAGATGGAAACTCAAAATGGCAAAAGAGCTGTTTTAATGTGGGAATAAATAAAGAAATGACTGTTATGGAGCTGATAATCAATGAATATTTGTTGAATGAAGGGTGCCTATTGAGATTAGATGTTAGACAGATAGCAAATATATCTCTTTTTGTACATTTGTTTGTCCCACCATCCATTAATCAATCCATCATGTCATCCATCCATTCATCCACATGTTCATTCATCTACCCAATCATTAATCAATTATTTACTGCATATTCTGTTTGTGCAAGTCACAAATGACTGTTTGTCACAGTCACAGTTAAACACAAGGAGTAACTACTTCCTTTCTTTGTTATCTTCAG
Seq C2 exon
GAAAACGAATTTGTGCAGGAGAAGGACTTGCCCGCATGGAGCTATTTTTATTTCTAACCACAATTTTACAGAACTTTAACCTGAAATCTGTTGATGATTTAAAGAACCTCAATACTACTGCAGTTACCAAAGGGATTGTTTCTCTGCCACCCTCATACCAGATCTGCTTCATCCCTGTCTGAAGAATGCTAGCCCATCTGGCTGCCGATCTGCTATCACCTGCAACTCTTTTTTTATCAAGGACATTCCCACTATTATGTCTTCTCTGACCTCTCATCAAATCTTCCCATTCACTCAATATCCCATAAGCATCCAAACTCCATTAAGGAGAGTTGTTCAGGTCACTGCACAAATATATCTGCAATTATTCATACTCTGTAACACTTGTATTAATTGCTGCATATGCTAATACTTTTCTAATGCTGACTTTTTAATATGTTATCACTGTAAAACACAGAAAAGTGATTAATGAATGATAATTTAGATCCATTTCTTTTGTGAATGTGCTAAATAAAAAGTGTTATTAATTGCTGGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138115:ENST00000371270:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTACTGACTTCCGTGC
R:
CAGGTGATAGCAGATCGGCAG
Band lengths:
351-1938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development