BtaINT0046180 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023549 | CYP2C19
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 19 (CYP2C19), mRNA. [Source:RefSeq mRNA;Acc:NM_001109792]
Coordinates
chr26:16336198-16339208:-
Coord C1 exon
chr26:16339067-16339208
Coord A exon
chr26:16336840-16339066
Coord C2 exon
chr26:16336198-16336839
Length
2227 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
AATTTATGTGTCATTTTTAGGAA
3' ss Score
10.57
Exon sequences
Seq C1 exon
GGCACAGTCATATTAACATCTCTGACTTCTGTTCTGCATGATGATAACGAGTTTTCCAACCCAGGGCAGTTTGATCCTGGTCACTTCCTGGATGAAAGTGGCAACTTTAAGAAGACTGACCACTTCATGGCTTTTTCAGCAG
Seq A exon
GCAAGCATGCTTCATTTTTGTCTGTACATTAGAGGTCAAATGAGAGGAGGAAGAGCTTTGTATGGAGGCAACTCTGAGCTGGACAAATTGTCATTTTCATGACTCCAGAGGCACCACTCCCAAGGTGCAGATAATTTCTGATTGGATTGGAGGCTGCACTCACTGAGTTCTGCCCTCTCACCCACCTCTGACAATCTTAAGGGCTCCTCGTAGAAGTCTAGTTCCACTGAGACTTTTCTCCCCCGTCCAGAGATGCCATTCACTCAATAAATGTCTCTGAGGACCTTATATGTAGTAGACCCATGCTCACTCAGATCCAGGGATAGAAATGTGAATAAGGGACAGCTCTCCTTTAAGAAAGAGGAATGTGAGTTAACAGATGATGATACTCCAGAGAGACAAGTGCTATTCAAAAGGCTTCTGTGGAAACCCAGAGAGAGGAGCTCCTGAATCTTACATTTTGGGAGCAGGGCAGAGGACAGAGTAGTTGGAACAAAAGAGAAATTTTCTTGCAGGAAGAAATATTTTAGTATCCTCCTTTAATTTGGGGAGGTCCTTGAAAGAAAGAGGCAGGGTACTCAAAAAGTTTCATTAAAGGCAGTTTAATGAAGAGACTCTTTTCAGAGGTGTGGACATGATTAACTGAAGTATCAAGGAATGGTCAAGTACTCAGGGATGAGCATCAACAGGATGTCATCATCCTATGTCAGAAGGACTGGGAGAAGGAGGGTGTTGCTGGAACCCAAGCAGATCTTTAGCAAAGAGAGAATGGATGCCTCAGCAGGAGATGGGTCTATAGGCTGGAGAATACAGCCACTGCTGAAATTGTGGCCTGACAGGCCGGGACTGAGGGAGGGCATACTCTAACCTTCTCAATGTCTAATCCTGAGTTTATTCACGGTGAAGAAGGGAACTAACTAGTGGGGTTATGCAGTCCATAGAAATCAACTTCCTAAATACACAGTAGGTGTAAAAGAAAAACAAACACAGCATGGATCTGGAAAAATGGAGAAATGGAGAGTGTTCAGCACAGTCCAAAGGATAAGGGTAGAAAGTAGAGGGTGAAGGGCCTTTCCTACAGAAGGAACTGAAATAGGGACAGAAATAGGAGGTTCACTCCTCATTGAACATCCAGGAAAACAGGTTTGAAGGAATGCTTGATGCTTGGTCCCAAGATTATGAACAATGCCCAGAATTTGATCTCAAAATGAGATCCTGCTAATCTTTTCCTTATCTACTTCCTGAATTTTGGGTCCATTGTTTCATAACAAACTGGCTTAAGATTTCTGCCCAGTTTGTGGGGTTTGCAGGATTGCTTTGTCTTGGCACTGTAGTATCATTATAAGACCTAAGGCTTCACTTTCTTGTTGCTGTTCAGTTGCTAAGTCATGTTCGACTCTTTGCAACCCCATGGATAGCAGCACACCAGGCCCTCTGTCCTCCACTGTCTCCCGGAGTTTGCTCAAATTCATGTCCATTGAGTTGGTGATACTATCTAACCATCTCATCCTCTGTCACATCCCTTCTCCTTTTGCCTTTACTTTATGAGCTTATATTCCAGGGTGTGGGACACAGGATAATTATAATTTCATGTGAAACATTTTGTATTAGAAGTATTTATGAGTCTTGTGGAAAACCAGCAAGAGAATGAATTATATCCCCCTGGATAGATCAAAGAACTCTGTATAGAGCAGGTGACACCTGTGGTGGATCTAGAAGGATATAGATAATCTCAGCAGGAAGAGCTGAGGGAAACAATATTTCAGTTGGAGGAATGACTGGATACTCATAACACTTGAAATAGCTAGTGTGTCTGGGGGTTAGAGAATGGTTAATAATATTTGTGTCAAGTTTGTGACATTTCTTTTTATACTTGGCAATGGTAAACTCTCGAATTGGAAGTAAATGGAAAAATATAGTGTGGAGCTCATGTTATTTGGGATGGGTGAGTGTGTATGTAGAAAGATATTACTGGCAAGCCTCAGTAAAGCAATATTGACATGGGTGTACAGAACAGACTCCGTTTAATAGAGAATGTACACTGAAATCTGTTCTGAGGAAATAAAGCAAACCGGATTTTGGTGTAAATAGAAGAAGCCATAGGTTAATTTGTCTTTTATTAATTTGTTTGTTTATGTATTTACTCATTCCATATTTATTTATGCTCCCCTTTGTGATATGTTAGAAATAGAATTGAACAACTATTTAATTTATGTGTCATTTTTAG
Seq C2 exon
GAAAAAGAGTTTGTGTTGGAGAAGGCCTGGCCCGCATGGAGCTGTTTTTACTCCTGGTCAGCATTTTACAGCATTTTACCTTGAAATCTGTGGTTGATCCAAAGCACATTGATACTGCACCAAGTTTCAAAGGGTTAATCTCTATTCCACCCTTCTGTGAGATGTGTTTCATTCCAGTCTGAAGAAAGGGCTGACTGCCAGGTTGCAGAGTGAGCCTCTCCAGCTCCATCTACACAAGCTGATGCTCTCTGTCCTGGCTGTTACCCATTGTCCAACTCTCCCTTACCTTTAGGAGTGACATTCTTGAGCCCTGCCTGTTCTAATTTTCTTTAAGATTCAGTTCAAGCTTTTTTTTTTTTTTTTTGCATGAAATAAAACAGTTTTGTCCCCAATAATTTTTTTTTTAAATTACAGTCCTGAGATCTTAAGCTACATCCCATTTATTGTGTATACCAAATGGAGGGCACCTTATAAATGTCATATTTTATTAAAAATTAAAATTGGCAATTATCCCATGTGATAAAATTTTTAAAAATGTATTCATCTCTTACTCCTATTTAGCTCTCTGGGGGAATGATCTCTTGACAGTTTGGATGTATAATTTTGCCTTTTCCCAATGTTTATTAAAAATATAATTATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023549:ENSBTAT00000032167:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]