RnoINT0044333 @ rn6
Intron Retention
Gene
ENSRNOG00000024016 | Cyp2c6v1
Description
cytochrome P450, family 2, subfamily C, polypeptide 6, variant 1 [Source:RGD Symbol;Acc:619934]
Coordinates
chr1:147812781-147814395:+
Coord C1 exon
chr1:147812781-147812922
Coord A exon
chr1:147812923-147814078
Coord C2 exon
chr1:147814079-147814395
Length
1156 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
TTTTGGCATTTTCCTCCTAGGAA
3' ss Score
9.09
Exon sequences
Seq C1 exon
GGAACAACAATAATAACATCACTCTCATCAGTGCTGCATGACAGCAAGGAATTCCCCGACCCAGAGATATTTGACCCTGGCCACTTTTTAGATGGGAATGGAAAGTTTAAGAAAAGTGACTATTTCATGCCTTTCTCAGCAG
Seq A exon
GTAATAGAAACTCATTTCCATGGTTCCAGTGACATGCAGAACCGTGGGGACTTAGAGTGTGACTCTACATGTGCTGATAGCTTGCATCTGCATGATAAGGAGCATAATTTTCATTGTGTATGCACTGTCCTTGATATGACCACCTTCTTTATCAGGGTATGAAAATGAGTGTTTTGATTGTTTATCAGTTGTTCATAAATTGAGAAACCTAGAGTATAGGGAATTTGCTTTCTTCTTTTAGGTAAATTACAGAAATACCAAGGATACCATTCTAGAAACTAAACTTCACTTACATTTTACTTACTCCCCATGAAAATGGAGACTTCTTCAAAATTAAATTCCTTCTTTGCTCTTACTCACCTCCAGACTGGATAATAAGCTATGTCTCCTAAAACATAGAAAAGCACCAAGGGGCCTAAAACATATACAGGAAACAGAGGAGTGATTACTTCATGCCAATACAGTATAGTTAATGCATGTGAGATTATCACATATCCCTAGGCCAGAGGGATACTGGGAAAAGTTCATACCTTGCTCTTTCACACATTACATTTTGTACAAAACATAGAGCAGCATTCTCATTAAAATGTCTAACTTACTCAAAGGGTATAGGTCACAAATAATATTCAAAAGAAAATGGAGATCATTTCTTTGAAGTTTGTTAACCAATTGAAGAGGACATTTTCTCTCTTTTGAAAAATTTTCAGATCACCTTAGTTTGATGAAAATATTGTAGATATGCCATCATGCCCTGCAGTGGCCTCAGGGTTCCCCTCTCCCAAATTCAGGGTATGAACAGTGGATATAAAGTACATTTCTGTAGTGTGTGTGCTACCTTAGTTTTATGTTCTTTATGAAAAATTAAAAACCTCCCCCTCCACAACTTTCCTCTTGCTTTGAATATAGGTAAGATCATAACATCTATCTAGGTGACTAGTACTTTTGAATGATGTATTCTTTGATATCATATGTTAGTTTGAAAAATGACTCTTTTTGTCTAAAATGTTTTTCCTTTAGCCATCCATTAATCTAAAAAAATGTATGCTTTAACTCAGTAGTTACTGTTATTCCCTTGTATTTTTTGTACCAGTGCAGTACATCTCAGGTCAACACCGTGTACAAGGAATAATTACCTTTTTTGGCATTTTCCTCCTAG
Seq C2 exon
GAAAACGGATGTGTGCAGGAGAGGGCCTAGCCCGCATGGAGTTATTTTTATTCCTGACCACGATTTTACAAAACTTTAAGCTGAAATCTGTACTTCACCCAAAGGATATCGATACAACTCCAGTTTTCAATGGATTTGCCTCTCTGCCACCATTTTATGAGCTGTGCTTCATTCCTCTCTAAAGAGATCAAATTGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAATAAATAAATAAATAAATAAAGAGATCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024016:ENSRNOT00000054742:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCAAGGAATTCCCCGAC
R:
CCTTGCGCTTCCTAGGTAAGC
Band lengths:
346-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]