RnoINT0044312 @ rn6
Intron Retention
Gene
ENSRNOG00000021924 | Cyp2c22
Description
cytochrome P450, family 2, subfamily c, polypeptide 22 [Source:RGD Symbol;Acc:620368]
Coordinates
chr1:259257657-259260971:-
Coord C1 exon
chr1:259260830-259260971
Coord A exon
chr1:259258055-259260829
Coord C2 exon
chr1:259257657-259258054
Length
2775 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
CAGTTGCATGTCCCTTTTAGGAA
3' ss Score
7.31
Exon sequences
Seq C1 exon
GGCACAAGCGTAATGGCATGTCTGACTTCTGCCCTGCACGATGACAAAGAATTTCCCAACCCAGAGAAGTTCGACCCTGGCCACTTTCTCGATGAAAAAGGCAACTTCAAGAAGAGTGACTACTTCATGGCTTTCTCAGCAG
Seq A exon
GCAAGCAAGCTTTGTGTTCCTATGTGTTAGGGCCCAGGTGAGGTGAGCAGGGCTGTGCATGAAGAATCCCATGGGTGGCATGAATAGCCGTCTTCACGAGGCCAGAGGCAGTACTGCCCAAGTGATGGCTGCTTCTTATTGGATTAGAGGTTCCACCCACTGATTCTGCTTTGTGACTCAGGGATGAACTTCTTGATAGTTCCTACTAGAAGAAATCCTATTCTAATTAGGACTTCCTTTCCACCCAAAGGAGCCAGTCACTGTAAACCCAAGGAATAAACACCTTACATGTAACAACTCAGGCTCAGATTCAGTGGTACAGTGTGTGAAGGAAACAAAGGTGATAAAGGAAAAGATTATTCTGTGAAAGTGTGCCTCACTCAAGTCCTTTTGGGGAGCCAGATAGAGTAGTTGCAACTCTGGTGTTTTTGAAGGACAACAGGTTGAGTGATCAGACCGTAAGAGAAATTGCTTGCAGAAGGTACCATTTAATTACCTTTCAATTTGAAATGGTCTCAGAAAAGATTGTTGCACTCTAATGTGTGATTAAGGAGTTTAAGGAAGTGACTGTCCTCATGGGAACAGAGGAAGTGACAGAGTATGGAAAAGTCCTCAAGACTCACACAAAAAGCTGTAGTGGATCAATAACTTAGTAGGGCTGGGCCCTCTCCTCCTTAGACTCTTCCTCTGTAACCTATGTATTGTAGAGAAATATAGGCGGCAGCCAGAGCTGGGACCTGGCAGTGTTAAACCAGAGGAAGAAATAATCACCCAATGTCCAACCTGATGAGTTTATTCAGACCCGGAAGGAGCTAACTCTTAGGCTAATGGAGTCCATGAAAGCTACTTCTTGGATATAGGATGCATAAAAGTCAAATGCAGAATGGGAGAGTAACCAATGCTGATAGGGTGTGGATGAGGAAGAGTGGAGGTCGAAGGTCCTATCCTAAAGTGGACAGAAATAGTAGATTTGCTTCAAGTTTTGTAAGAAATGTGTGTTTGGCAATGCTTGTAGTCATAATTCCACACTGAAATGCTCAGGGAAGCTCTCAAAGGGTAGAAAGCCACCCTGCTGTCTAACTCCTGTCTTCCTTACTGTAATTTGGATTATCTACCTTGTGAGGTTCCTGTTGACTTCTCATGTGCTAAAGGCCTGCTTTGTCCTAACTCTGTGGGCATTAGTAAAAGAACTAAGGCTTCGTCCTTAGAACTCATATTGAATTTTTTTATACTAACTAATAATTTAAATTTCATAGACATTGTTTTGCATAAGAAGCAACTATGGCAAACAAACACTGTGTTAATTTTGTTTAAGAAGTTTACACAGACCACATGACATCTAAGCTGAATCTGAAGGGATACAGACAAGAGGTAGAGAACAGTGGCTGTTCATCTACTCAGAGAAGTGACTAGAATGTGTCACAGGAAGCTTGTTTCTGTCCATCTCCTTTGCAATGGGAAAATAGAGATGGCTTAGGTCTTGGGAAGTTGAAAGAGCAAGAGGAAGTTAGATTCCAATAATCATTTGCAGAACACTTTGTAGCATTTGTTTTTACACCTGCCCATGTCCAGTTTTAGATTATTTTTCTTTTAGCAGATTTATGACTTGAGTTATCCCTTAGAAAGCAGATCAGTAGAAATAAGCTACCAAGACCTGGGGGATAGGAGAAAAGGACACTTTTGTATCATATAAATTTCTATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGTGTGCATGAGTGTGTGCTGGTGTGCTCATGCCCATGCCTCACACTCATGACTACGGCAGTGTTCCTGGTTAAACTCAGCTGGTCATAGAGCCAAAACAAGACAAAGAACCATGTAGACATAAAAGTGAGATAAAAACTTAGTTTGAAGATGGTGTGGAGGAACCTAGGAGGTATGAGTGCAATAGTAAGTGAAACTGAAATTTACTTACATGTATTTTCATGTATGAAAAGAAATAATTAGCAGCAAAATATAAAAATACACATGAGCAAAAATAAATGCACTTAATAAGATTTCTTTTTGTATACACACACACACACACACACACACACACACACACACACAAGAATAATCAACCATGCATGGTGGCATATGCCTTTAATCTTAGCTCTTGAGGAGGCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGTCAGAGGCAGAGTCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGAGGCAGAGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAGAGGCAGAGGCAGAGGCAGTGGCAGAGGCAGTGGCAGAGGCAAAGTGGATCTCTTTGAGTTCAAGGCCAACTTCGTCTCCAAAGAGAGTTCCAGGACAACCGGGACTGTTATCACGAATTTACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGTTTATGAAAATAAAAATGTAAAATACAAACAAAAAATGGTTAAAAGAAGAAAAGAAAAGGCATTTTCCTGAGGAAAGGAAGGGAAGAAATCAGAACAGTGAAGAAATACAATCAGTTGTTAGGTAATTAGTTTATGTTAATTACTCACTCATAACATATTTTCTATGTGTGTTAAGGCAGAATCAGAATTATGAGGAATCAATGGCTTACCAGTTGCATGTCCCTTTTAG
Seq C2 exon
GAAGAAGAGCCTGTATTGGAGAAGGTTTAGCCCGCATGGAGATGTTCTTAATCCTGACCAGCATTTTACAGCATTTTACTTTAAAACCTCTTGTCAATCCAGAGGACATCGACACAACCCCAGTTCAACCTGGTTTATTGTCTGTGCCCCCACCCTTTGAGCTCTGTTTCATTCCAGTCTGAAGCGGCATAGTCTTTCACACAGATGACTGAGACCCTGCTTCTACTTGTGAGCAAACAGGTCCTCCTGTCCTGTGTACCTGTAACTGGCAGTCCTTCCTGAATGGCAGGGATGCTACCTCTGAACTGTCCTACATTTTTTTCAATTCTTTGTGAACCAGTTCCAATTTTTCATATGTGAAAAAACTTCACTGTTTTAGCACTAATAAAGTTTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021924:ENSRNOT00000054724:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.3=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]