HsaINT0044303 @ hg38
Intron Retention
Gene
ENSG00000197446 | CYP2F1
Description
cytochrome P450 family 2 subfamily F member 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr19:41116178-41116617:+
Coord C1 exon
chr19:41116178-41116359
Coord A exon
chr19:41116360-41116454
Coord C2 exon
chr19:41116455-41116617
Length
95 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAA
5' ss Score
2.22
3' ss Seq
TTCTGTCTTCCTACCCTCAGCTG
3' ss Score
9.33
Exon sequences
Seq C1 exon
CTGCCTTCACCATGGACAGCATAAGCACAGCCATCTTACTCCTGCTCCTGGCTCTCGTCTGTCTGCTCCTGACCCTAAGCTCAAGAGATAAGGGAAAGCTGCCTCCGGGACCCAGACCCCTCTCAATCCTGGGAAACCTGCTGCTGCTTTGCTCCCAAGACATGCTGACTTCTCTCACTAAG
Seq A exon
GTGCAAGGCCCTTAGCTTGGGTGATGGTGGAAGGATAAGGAGGAGGGGTCCCATGGCCACAGGCCCCCCTGTAACTTCTGTCTTCCTACCCTCAG
Seq C2 exon
CTGAGCAAGGAGTATGGCTCCATGTACACAGTGCACCTGGGACCCAGGCGGGTGGTGGTCCTCAGCGGGTACCAAGCTGTGAAGGAGGCCCTGGTGGACCAGGGAGAGGAGTTTAGTGGCCGCGGTGACTACCCTGCCTTTTTCAACTTTACCAAGGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197446:ENST00000331105:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=45.6)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCTCTCAATCCTGGGAA
R:
AAACTCCTCTCCCTGGTCCAC
Band lengths:
182-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development