MmuINT0045021 @ mm9
Intron Retention
Gene
ENSMUSG00000052974 | Cyp2f2
Description
cytochrome P450, family 2, subfamily f, polypeptide 2 [Source:MGI Symbol;Acc:MGI:88608]
Coordinates
chr7:27906570-27907016:+
Coord C1 exon
chr7:27906570-27906760
Coord A exon
chr7:27906761-27906853
Coord C2 exon
chr7:27906854-27907016
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
ACTCTCTCTTCTACCTCCAGCTT
3' ss Score
9.53
Exon sequences
Seq C1 exon
GCGCTGCAGCTGCCTTCACTATGGATGGTGTGAGCACAGCCATCTTGCTTCTCCTCCTGGCTGTCATCTCTCTGTCCCTGACCTTCAGCTCACGGGGCAAGGGCCAGCTGCCTCCAGGACCCAAACCTCTCCCAATCCTGGGAAACCTGCTGCAGCTTCGCTCCCAAGACTTGCTGACCTCCCTCACCAAG
Seq A exon
GTGCAGGAGACTTGGCAAGGGCAAAGGGCAATGGAGCCAGGAAGGGTTGCCACGGCCACTAAGCCCCCTGTAAACTCTCTCTTCTACCTCCAG
Seq C2 exon
CTTAGCAAGGAGTATGGGTCGGTGTTCACGGTGTACCTGGGGTCCAGGCCTGTGATAGTCCTCAGCGGATACCAAACTGTGAAGGAGGCTCTTGTGGACAAAGGGGAGGAGTTCAGTGGCCGAGGCGCATACCCCGTCTTTTTCAACTTCACCAGGGGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052974-Cyp2f2:NM_007817:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=45.6)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAACCTCTCCCAATCCT
R:
TCCACAAGAGCCTCCTTCACA
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: