RnoINT0044370 @ rn6
Intron Retention
Gene
ENSRNOG00000032805 | Cyp2f4
Description
cytochrome P450, family 2, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:2476]
Coordinates
chr1:83935546-83935987:+
Coord C1 exon
chr1:83935546-83935736
Coord A exon
chr1:83935737-83935824
Coord C2 exon
chr1:83935825-83935987
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAG
5' ss Score
3.97
3' ss Seq
ACTCTCTCTTCTACCTCCAGCTT
3' ss Score
9.53
Exon sequences
Seq C1 exon
GCACTGCAGCTGCCTTCACTATGGATGGTGTGAGCACAGCCATCTTGCTTCTCCTCCTGGCTGTCATCTCTCTGTCCCTGACCTTCACCTCATGGGGCAAGGGCCAGCTCCCTCCAGGACCCAAGCCTCTCCCAATCCTAGGAAACCTGCTGCAGCTTCGCTCCCAAGACTTGCTGACCTCACTCACCAAG
Seq A exon
GTGCAGGGTACTTGCGTTTGGCAAAGGGTGATGGAGATGGGTTGCCATGGCCACCAAGCCCCCTGTAAACTCTCTCTTCTACCTCCAG
Seq C2 exon
CTTAGCAAGGACTATGGGTCAGTGTTCACGGTGTACCTGGGGCCCAGGCGTGTGATTGTCCTCAGCGGATATCAAACTGTGAAGGAGGCTCTTGTGGACAAAGGGGAGGAGTTCAGTGGCCGAGGCTCATACCCCATCTTTTTCAACTTCACCAAGGGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032805:ENSRNOT00000068690:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=45.6)
A:
NA
C2:
PF0006717=p450=FE(11.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGCCTCTCCCAATCCTA
R:
TCCACAAGAGCCTCCTTCACA
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]