Special

HsaINT0044431 @ hg19

Intron Retention

Gene
ENSG00000162365 | CYP4A22
Description
cytochrome P450, family 4, subfamily A, polypeptide 22 [Source:HGNC Symbol;Acc:20575]
Coordinates
chr1:47603107-47606593:+
Coord C1 exon
chr1:47603107-47603352
Coord A exon
chr1:47603353-47606451
Coord C2 exon
chr1:47606452-47606593
Length
3099 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CTGTCTACCCTCGTTGACAGTTC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GGGTGGTCAGAGAGAGGAAGGGGCACTCAGAGATCCAGCAGGTGCTGCACCATGAGTGTCTCTGTCCTGAGCCCCAGCAGACGCCTGGGTGGTGTCTCCGGGATCCTCCAAGTGACCTCCCTGCTCATTCTGCTTCTGCTGCTGATCAAGGCAGCTCAGCTCTACCTGCATAGGCAGTGGCTGCTCAAAGCCCTCCAGCAGTTCCCGTGCCCTCCCTCCCACTGGCTCTTCGGGCACATCCAGGAG
Seq A exon
GTAGGGAGGAACTCAGTGGGGGAGTGGGAGGGCAAGGAGGGATGCGGCTCTGAGACCCTGGTCACAAAATCCATAGAGCAAAGCCTTGTTTTGTAACAAACGTGAGGCCTCATAGGAACACCCAGCCTACCTCTCTGGTTTCAGCTTGTCCCAGTCATGAGGAGCTCACTCCTCCCATGAAGCCCATCCTGCTGGTCCTCAGCTCTATCACACATGCCCTCCTTCTGCAGATATCAAGTGTGTCTTGGCAGTCCTGCACATGGAGGGCAATGCCTGATTGTCTCCAGACTGATTACCCCATAAGCCTTGGCTTTTCTCAAAGAACAAGGCTTCTAGATGCTCCCTGTCCAGTCACTCAATGCCATTGTCTCTGCCTGGCCCTGCATTTGCCTGGGAGCACAGACACCCATCTGAGGACTCTGTGCCATGAGGAGTTCATGGTCTGTGAAGAATACAGGCAGGAATTTGAGAAGGTGTCAGACTGCAGGAAAAGAGCTCACTCTGCTGGGGTGGATATCTGAGGCAGAGATCTGCTGGTGTAGGGGACCAACTGGCTAAGTAAGTTTCCCCAAGGCTCACGGAATTTCCACAACAGGTGATTTAGGACCTGAAAACCTGACAATTGTGGGTACACATGAAGGGGGCAGCCTGCACAATGTCCTCCAAGTGAGGAGACTGGTGTTTGAGTTGCACATTGAACAGGGTGTATTGACCTCCTGGCTCTCCTCCCACGCACCCAGACTGTGAGCTCCCTGGAGGTGAGCATGTCATCCCCTTCCTGTGCCCCGGCAATCAGCAAAATCCTGGCACAGCTTGATGGTCAGCTCAGGTGAATAGAGCAAGCTTGTCCAACCCATGCCCCATGGGGCTGCATGTAGCTCAGGATGGCTTTGAATGTGGCCCGACACAAATTCGTAAACTTTCTTAAAACATTATGAGATTATTTTGCAATTTTTTTGAGCTCATCAGCTATCATTAGTGTTCGTGTATTTTATGCACGGCCCAAGATAATTATTTTTCTTCCAATGTGGCCTAGGAAAGCCAAAAGATTGGACACACCAGGTGTAGAGGAACAGAGGAAGAAGAGAAAGGAGCAGCAAGAGGGCTGAGGAGGGACACAGCCCATCCCCTGTGCACTGCTATCCCTGCATGGGGAGAGGGGCGGGTAGGAACAGAGCAAGGTAAACGGCTGCATGGAGAGGGACTCACCAAGGTGCTATGAATTGAACACACTTAAGTAGAGATAGGGGTTGCAGGGAGCTGAGGCCTATTGTTTCTCAGCAAAGGAGGCAACATAGTTCTCAGCAGAGCAGAACCAATGTGGGGACCTGACAAAGTTCTAGCCCTATATGGACTGGTCCCAATACCACTCCACCTTCTTTCCCATTCTCCTCTTTTACCATATGTTACTCACTACCTCACTACCTGCCTCTGCATTTCAACCTCTAGGCCTCTGATCACAATGTGCTTGCTACCTGGAATTATTTTCTCACTCATATCTATCGGTCAAGGCCCAGCACCAAGCTACCTTCTTCAAGAAGGCCTCCTGGGTCTCCCAGAAGTGAAGGGCCGACTCTTTTTTCTATGGGCTATCCTCAAGAGGCCAGAGCAGTGTTAACTTGACTTAGTTACTGTTCTGCAGTGTCATAAGTGTGGGATTCTTCTGGGAGAGACCATCTCTGATTTATGTTTGTAACCTAATAGTCCCTCAGTAAATGATGACTCAGTGAGTGAGGAAGAGCTTTCTAATGTTCAGTTCTGAGTTAGGTCCCTCTTCAAAGCTTCCCCAGATGCTTGTCCTTCATTCCATCTCATGTCCATTATCCCCTACTGCACAGCCTCTAATCTTCCTTACCCCCCAACTAGACTGAAAATTCCACACAGATAAGGACCACAGCTGTGTCCTAACGCAGTGCCTGAGCCACACTGGGCACATAGTATGTGTGCAGTAAGCATGGGCTGAATGAAGGAGCCTACCCCACAGTAGGGCAAGCTGCCTCAGAGCTGGACAATATGATTATCAGAAGGAGGTGGGCAGACATTAGATACTTATGTGGTAGACAGTTGCTTTGAGTTACTAGAAGCAGTTGAAATAAAGAAGAGTTGGCTACATGGAACATCACTAGGACCCAATGTCTTTGAGGGTTCCAGATGAGATTAAAGCAAAGCTGAGTCTTGAAAGCTGAGGAGAGGTGGCTGCTCTGTGGCAGATGGAAGGGCATTCAAGGTAGAGAAAAGAGCAAGTGCCAGGGCCCAGAAGAGTGAGCAGGTGTAGCTGGTGTGTGAATCAGCAGCAGTGGTGGCATCGGCGTTGGAGCTGAAACAAACGGGTGATGGTGGAATTGCCAGCAGGGCTGGAGGCAAGAAAAGAGAAGTTGAAGCCAGAAAGCCAAGGGCTTTGTGATCCACATCGAAGAGTTTAGAAAGATGACTGCAGGCAGCAGGGAGCTCATAATTCATTGATAAGTGAAAATGAGAATAAGAAACCCAAATCTCAAAATTATAGTCCAACACCAGCACCATATGCATATACTCAGACTCCATCCCATAAATCTGTACATATTCAACATGTAGAATACTATTATGCACACAATTTTATAGTTAATCTTTTTTTGCTTAGCCATACACATCCCAAATGCTATTTTATCTCAACAAATATTTACCATATATTCTGGGACAATATTGAAAATATAACAAGTATGATTATATAAAATTATTGTGTAATTTAAAATGTTCACATTAATTCATTTTATTCTCTAGATATACCAAATGATTTTACAAATCTGCTCATCAAGTAATACGAGTTATGCACATTGCCCAAGGAAATTGTTGTATTTATGACTTCCAGAGATGTTACACAACATGAAGACAATGGCTGACTTAAATTTCTGCTGGCAGCATTGAGTGAGGGCTCATAGCGCTTGGCCTAAGGTCAAGTCCTGGGGAGATACAAAGAATCTGGATCACAGCTCAGGTCATCAGAAACAGATCTAAATCCCTAACCCGTGCTACATGGCTCCTGTAGTTGTCCTGCCCTTCACTCCTGCTGCAAAGACTAGAAGTAAATGAAAGTGTTCATCTGTCTACCCTCGTTGACAG
Seq C2 exon
TTCCAACACGACCAGGAGCTACAACGGATTCAGGAACGGGTGAAGACATTCCCAAGTGCCTGTCCTTATTGGATATGGGGAGGCAAAGTTCGTGTCCAGCTCTATGACCCTGACTATATGAAGGTGATTCTGGGGAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162365-CYP4A22:NM_001010969:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

No protein impact description available

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0006717=p450=PU(3.5=21.5)
A:
NA
C2:
PF0006717=p450=FE(11.6=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]