MmuINT0045256 @ mm9
Intron Retention
Gene
ENSMUSG00000066072 | Cyp4a10
Description
cytochrome P450, family 4, subfamily a, polypeptide 10 [Source:MGI Symbol;Acc:MGI:88611]
Coordinates
chr4:115190892-115192379:+
Coord C1 exon
chr4:115190892-115191115
Coord A exon
chr4:115191116-115192234
Coord C2 exon
chr4:115192235-115192379
Length
1119 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
ACTTATCTTTTCTTCAACAGAAG
3' ss Score
9.13
Exon sequences
Seq C1 exon
GAGAGTGAGGACAGCAACAGAAGAGTGGATGAACTATGAGTGTCTCTGCTCTAAGCCCAACCCGATTTGCAGACAGCCTCTCTGGCTTCCTCCAAGTGGCCTCTGTGCTCGGTCTGCTCCTGCTGCTGGTGAAAGCTGTCCAGTTCTACCTCCACAGGCAATGGCTACTCAAGGCTTTCCAGCAGTTCCCATCACCTCCTTTTCACTGGTTCTTTGGGCATGAG
Seq A exon
GTATGAAGGAAAGAGAAGGATGGGTGGAAGAGAAGGGAAGATGGGTGTCTCAGAGACCAGCCATCAAATTCACAAGGAAAATCCTGATATATAAAGAGTCCAAGAGCTTCATAAGATGCCCAGCTCAGGCTGAGGCATGTCATCCCAACAATAGCGTTACTGTCTGACTGTTGCTCAACTCTATACTGATAGTCTTGCACTTTGAAAGCTTTGGTTGGTCCTACCTAGTCTCCTCCTCCTCTTCTGGCTGAGTACCTTTAATATCTCTACTGTTCTCAAACAACTTTTAAGTAGTTCCTTGACAAGTTACTTATGGCTATTCTCTCCCAAGCCCTGGGTTTGCCTGGGAATGCAAACATCAGAGAGACAGAAACCTTGCCCCTTGAAGTTCTTGATGTAACAATGGTGCACATCTTAGAAATTATCAGGCACAGGAAGGGTTCACACTGCTGGGCTGAGTGAGTGGCTGACCAAGACTAGAATTTTCAGGATGGGTAAATTACAAATTGAAATCCCAAAGTCATGGCACATTAAAGGGAAAGGGTGGGTAGGACCCTCATATGTGAACACTAATGTTAGTATTTCTACAGGGCTATGTGGCTCTTCTTCCTCTTTCCACACACCCTGCAATATAAGATACTTGGATTCAAGCACAGCATCACTTTCTTGTTCCACAGGGTTCAGCTAAAGAGCCTGGCACAAGTGTATGAAATTACCCAGAAAGGGAACTGGGAAGGGACAGTACTGACCCATTGCATTATCACCCCAGGAAATAAAGTACAGAGCCAAATAGGAGGATACATGAAAATGTGCACAACAAAGGATTGTGCAATAGATGTTCTTAGAAAGACATGGGTATGCCACGTTCTCTGAAGATCTGAGGATCTGACACTGTGATTCCTCTGAGGAACACAGCTCCATCCAACAGGACTCTCAGATTCAGCTCAGAACCCATACCCACATAGTAAAGCTATGAGTGATAGCACAGACAGTTCATCGAACTGCCCCACCTTCCTGGCAACTTCAGAAAAAAACAGCTATGTTCCTGTGCTTGCTCTACTCTTGTCTCCAGTCCAAAAACTAGGCAAGAGTCCCACGAACTTATCTTTTCTTCAACAG
Seq C2 exon
AAGTTCAAAGGTGACCAAGAACTACAGGAAATTGTGTCGTGCATAGAGAACTTCCCAAGTGCCTTTCCTAGATGGTTCTGGGGAAGCAAGGCCTACTTAACTGTCTATGACCCTGACTACATGAAAGTGATTCTGGGGCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066072-Cyp4a10:NM_010011:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(2.6=19.0)
A:
NA
C2:
PF0006717=p450=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCAACAGAAGAGTGGA
R:
TCGCCCCAGAATCACTTTCATG
Band lengths:
357-1476
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: