HsaINT0044438 @ hg19
Intron Retention
Gene
ENSG00000162365 | CYP4A22
Description
cytochrome P450, family 4, subfamily A, polypeptide 22 [Source:HGNC Symbol;Acc:20575]
Coordinates
chr1:47609434-47610135:+
Coord C1 exon
chr1:47609434-47609588
Coord A exon
chr1:47609589-47610028
Coord C2 exon
chr1:47610029-47610135
Length
440 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
3' ss Seq
TAACCATTGTTCTGGTACAGACC
3' ss Score
6.99
Exon sequences
Seq C1 exon
GAATTCTCAGTCCTACATCCAGGCCATTAGTGACCTGAACAGCCTGGTTTTTTGCTGTATGAGGAATGCCTTTCATGAGAATGACACCATCTACAGCCTGACCTCTGCTGGCCGCTGGACACACCGCGCCTGCCAGCTGGCCCATCAGCACACAG
Seq A exon
GTTCTGTCTCTTCCTCTTGTCTCCCAGCCTTTCCCAGGCACAGTGAAAGTACCTGCCCTGACTCCTCAGGCAGAGAAGGTCCCTAGTAATCCTGCAGAAGCCAGAACACACTCAGCCTGGGGAATTCCCTTGCTCAGGGGCTGGGAGCCAAGATGTGAGGGGCCGGATTCTGTGCCTTGGTTTATCAATGTCCCCACATGGAGATAACTGAATGAGACCCTGTCCAAACAGCATTCAAGAGGAGCCTCCATGAACTGTGCCACTGGTGGGAGGGGTGCCCTGCCTCACACAGTACTAGAGCTTCCACCCCTGACCCTGCACCCACACTCACATTCATGCTGAGATCTACCAGGCACCCACACTGGGGCAGTTGGGCAGCTAGGCCTCCTGGGGGCTGCTGACGGTCTCAGCTCTGCCTGGTAACCATTGTTCTGGTACAG
Seq C2 exon
ACCAAGTGATCCAACTGAGGAAGGCTCAACTACAGAAGGAGGGGGAGCTGGAGAAGATCAAGAGGAAGAGGCACTTGGATTTTCTGGACATCCTCCTCTTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162365-CYP4A22:NM_001010969:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.8=100)
A:
NA
C2:
PF0006717=p450=PD(3.6=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCTCAGTCCTACATCCAGGC
R:
TTTGGCCAAGAGGAGGATGTC
Band lengths:
262-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)