GgaINT0035774 @ galGal3
Intron Retention
Gene
ENSGALG00000010469 | F1NNP0_CHICK
Description
NA
Coordinates
chr8:22609501-22609939:+
Coord C1 exon
chr8:22609501-22609652
Coord A exon
chr8:22609653-22609832
Coord C2 exon
chr8:22609833-22609939
Length
180 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TTGGTCGTTTTTCTACATAGATA
3' ss Score
8.2
Exon sequences
Seq C1 exon
CAACTCAGACACTTACATCAAAGCCGTTTTCGACCTGGGCTACCTCATAAACAAGAGAATACAGAATTTCTCCTACCAAGATGCCTTCTATGACCTGACTCACAGCAGCCGGGAGTTTCAGGATGCCTGCAGGCGGGCCCATGCCCACACAG
Seq A exon
GTATTTCTGCTCCTTGCTCTCCCAGCTGCACCTCTTGCACACTCGCATCTGGAGCAGCTCAGTGGGGTTACAACAAGCACTGGCCAGAGAGTTAGACATTAAACAGGGTCCAAGAGGCTGAACAAACAATTGTGAGCTCTCTGGCAGGATGCATCTAACATTGGTCGTTTTTCTACATAG
Seq C2 exon
ATAAAGTAATACAAGAAAGAAAGATATTGCTCTCCAATGACAAGGAGCTAGACAAGATCCGGAAGAAGAGACACCTGGATTTTCTGGACATTCTTCTTTGTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010469:ENSGALT00000017045:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.3=100)
A:
NA
C2:
PF0006717=p450=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACACTTACATCAAAGCCGT
R:
AGAATGTCCAGAAAATCCAGGTGT
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]