MmuINT0045472 @ mm9
Intron Retention
Gene
ENSMUSG00000047155 | Cyp4x1
Description
cytochrome P450, family 4, subfamily x, polypeptide 1 [Source:MGI Symbol;Acc:MGI:1932403]
Coordinates
chr4:114792764-114794384:-
Coord C1 exon
chr4:114794230-114794384
Coord A exon
chr4:114792865-114794229
Coord C2 exon
chr4:114792764-114792864
Length
1365 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
ACTATTACTTTTCTGTGCAGAAA
3' ss Score
7.92
Exon sequences
Seq C1 exon
CACCTATGAGTCTTACGTGAAGGCAACATTTGAACTTGGTGAAATCATATCTTCTCGCTTGTACAATTTCTGGCATCATCATGACATAATTTTCAAACTCAGTCCTAAGGGCCACTGCTTCCAGGAGTTAGGCAAAGTGATACATCAATACACAG
Seq A exon
GTAAAAACACAGACATATCTTGGGTGTGGATTGCCCAAATCCATTCACCACCATGCCTGTCTTATGTGTAGAAGGATAAGTCTCATGGTAAGCAAGAAAAGAACTCCTGTTCTTAATGGAGCTTTAACATGATCACTGTTCAAATAACTGCAACTTCTGTCCTTTAAGATAAGTTTACTCCCTCATTATCCACGTATTATGCAATTTTATTGTATGCAATTATTACAAATACATATATAGCAAGGGAGCATTTAAGATTGCAAAATGTACATTGCATGTGGCTTTCTTGTGCAGTAGATTAAGTAATAATTACAAGCTACAGTGCTTACACAGCATAGACATGGAGGAATGAGTAGATGTGGATATATATTCAAAAGACACACAAAAGCTGGATGTGGTGGTGTGGTACATGCCCTTTATCTCAACACTCAGGAGGCTGAGCCTGTGAGTTCCAGGCCGGCCTAGAATTTTGTCAAGTGAGTGTTGGGAATCAAAACTGGGTTCTCTGGAAAAGTAGCCAGTGCTCTTAACCACTGAGCTATCGGTCCAGTCCCAACAGTAACTTAGTTCACAATTTCATACATGTGTACAGTTTTGATCATCTCCATTCCCACGTTACTTTCTCTAGTCCCCTCCCTCTCTTACTGAACCCCCTCCCTCCAACTACTCTCCCTCCTACTTCCATGTCTTTTTTTTTTGAGCTTGCTGACTTCAAATAGCTTTGCTTCCATGAACACGGATGAGAAGCTAAACCCATGATGTATAGAAAATGTTTTTGAAAATCAAAGCACACTATCCTTACTTCCATCTAAATTCACTTAAGATTTATATGAAATGGTAAATTCAAATAGCAAAATTGACCTCAGTTAAGACAGGAAACAAATTAATTTTGTAGAAGGTGGTTGTAACCTGCTCTATCTGTTCCATGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTCTGTCTGTCTGTTTGCTTACTTGCTTTTAGCTCCTTTAGTTTGATATGTTGGGTGTTTTCTCTGCTGGTGATCTCATTGGATAATTTCCATGTAAAAACAAGTTTTATGACTGGAGAAGAAAATGATTGGCCACTTGCATCTAACTCTGCAATCATTTTGCTTGTCTAGTGGTAGAAACTAATTTTTGATCTCTTCTGTTTGAAACTTTCATTAAAGGTTGTCTATTGATGAAAAATAAACCACTCATACAAGTTTAATGTATTTAGATATAGTATACACACTCTGGACTCTGAATGCAGATGTGACACTTTGTGTGGGTGCTGTGTTGCTTTATAGTGTATTTGACTTTGGTTGACTTAGCTGTCCCCTTTGGTAATGAAGACTATTACTTTTCTGTGCAG
Seq C2 exon
AAAAGATAATCCAGGACAGAAAGAAAATCCTCAAGAATCAAGTAAAGCAGGATGACACTCAGACGTCTCAAATTTTTCTGGATATTGTTCTTTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047155-Cyp4x1:NM_001003947:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTATGAGTCTTACGTGAAGGC
R:
TGTGCAGAAAGAACAATATCCAGA
Band lengths:
255-1620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: