HsaINT0044551 @ hg38
Intron Retention
Gene
ENSG00000186377 | CYP4X1
Description
cytochrome P450 family 4 subfamily X member 1 [Source:HGNC Symbol;Acc:HGNC:20244]
Coordinates
chr1:47036017-47038766:+
Coord C1 exon
chr1:47036017-47036171
Coord A exon
chr1:47036172-47038659
Coord C2 exon
chr1:47038660-47038766
Length
2488 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GAAACTATTTTTCTACCCAGATA
3' ss Score
5.71
Exon sequences
Seq C1 exon
CACCCATGATCCTTATGCAAAAGCCATATTTGAACTCAGCAAAATCATATTTCACCGCTTGTACAGTTTGTTGTATCACAGTGACATAATTTTCAAACTCAGCCCTCAGGGCTACCGCTTCCAGAAGTTAAGCCGAGTGTTGAATCAGTACACAG
Seq A exon
GTATTTGTTGGGTTTGGGTTGCCCACGTCCATACGCTGCCATGATTGTACTGTGTCTGTCTAGAGGGATAAACCTTAATATGACAAGAGAAAGAATCTTTGTTATTAATGGAGCTTTTATATAGACACTGCTCCAAAGAAATTTGACTTGAGTCCTTTATAAGACTTTGCTTCAACCATAGCAGTATTATCAGAATTTTTATATATATATATATACACTATTTTTATTATGGACAATTATTATTAATACAAATATAAGTAGGCACTTAAGAGTTCCAGACATACATGGAATATGGCTTTTTGCACAGCGATTGCAGTAATAATAATGACAAGCTAAAAACATTCATGCAACATAGGAATGGAGAGTGGAACAGAGTAAACATGGACATGCACCCGAAAGAATATTGATTCAAAAACAGTTTTAGCAAGCATAAACACAAAAGTTGAAATAGATTAAGCTTTTTAAGCAATTCAACATTACTTGTCATGAATGCCATAATGGAGAATACTTATCAAGCAGTGAATTAATCCTTCATCAGCTTCACCACTTACTAGCAGTTACTAGTAAGTTACTTACTGCTTTGTTTCAGTGTCATCTATAAAATGGAGATTAAAAAAGAACCTATCTCATACATTTGTTGTTACGATGAGTGGGTTAATATATATAAAGCATTTAGGACAGTGCCTGGCACTGAATAGATGTTAAATGTAAAGTATAGTTATGTCAAATGTCTTTGCTTCCAGGAATTTTGCAAGACACACCAACATATGCACACTTACACATACATATATGCATACATGCACATAGATATTATAAAGAGGACACTCAGAGAAGCAGGTTATAAACAATTTAAGGCATAAATGGGCATTATAAATAGCAGCAGTTCCCAAGTCTTTCTGCATCATTGCACACACAGAAAATGTTAATGTTTTTGTGCTTCATTGGAGTAAACAGGAATGGATTTGGGGGAAGCTATACAGAACTTTGTAAAAAAAAATCTTTACTTTTTAAATATTATACAATTATGATGAAAAAGCAAAATGCAAAGTGTTAGGGAAAATATTAAATGTTAAATTTATTCAAAACTTAAAACCTTTTCAATTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCTATCACTCAGGCTGGAGCGCAGTGGTGTGATCTCAGCTCACTACAACCTCCACCTCCCAGGTTCAGGCAATTCTCCTACCTCAGCCTTCTGAGTAGCTGGGATTACAGGCACTGCCACCACACCTGGCTAATTTTTTTAAATTGTTTATTTTTATTTAGTCAAATATATCAATATTTTATTTTATTGCATCTGGATTTTTAGTAATCACAAAAAGCCATTCTCTATTCCAGGGTTTCTCAACCCTCAGCACTAATGGCTTCTTAGATTAGATAAGTCCTTGTTGTCAAGATGTGTGCATTGTAGGATGTTTAGCTACATCCCTGACATCTACCCACTCGATGTAGTAGAGCTCTGATAGTTATAGCAACCATAAATAACTCCAGACATTATTGAATGTTCCCAGGGCCCCCAGTTGAGAACCACTGCCCTGTACCCAGGTTGTAGAGAAAATTATTTATGTTTTCTTGTAGTACTTGTATAATTTCATTATTTTCATATTTAAATCAGAGATCTAAACTCCATTTAGAATTTATTCCTATATATGGTGTGAGGTATTGATCTAATTTTTCCAAATGTTTATCCAGTTGTCCCATCACCATTATTTAAAAGTTTATCTTTTCAAGTGATTTGAGATAACCATCACATTCTAAACGGATACATGTACTGGTATCTGTTTTGGATAAGAGTATATTTGGATGTTCTCGTGTATTCCATTGATCTATCTACCAATGTACCAGAATCACACTGTTTTAATTAAGGAGATTTTGTGGCTTTTTTCAACATTAATAGACCTTATTTTTAGAAAAGTTTTAGGTTTGCAGAAAAATTCAGCAGAAAGTACAGAGAGTTCTCATATTACCCATGTAACAAACCTGTACATGTACCCCTGTATCTAAAATAAAAGTTGAAATTTTTTAAATAGTAAATAAATATTACCTCTGTTCCATATTTTTGTTTTGTTTTTTTTCTCTCAGCTCCTTCAATTATAAATATATTGGCATTTCTTTGCCTGTCTTCTATTTCATTCCATTTTATTTAATAACTTTTCCGTGAAGATAAAATATTAGACTGAGGAAGAAAAGAATAATTGGTCACTTGCATCTAAACTTGAAATCATCTTAATTTTATTGCCCACATACTGATGGAAACTATGTTTTTTATTTGTGTTGTTTATCTTTGGAGCTTTAATCAAAAGTCCCTTTGATGAGAAAATAAACCATCTGTGAAAATTAGATCTATTTAAACGTCTGGAAATCAGGCAAGATTTGAAGCTATTCACTAACCATGGCTTGCTTTATAATTTATTTGACTTTGCCATCACTTTGGTAATTGGAAACTATTTTTCTACCCAG
Seq C2 exon
ATACAATAATCCAGGAAAGAAAGAAATCCCTCCAGGCTGGGGTAAAGCAGGATAACACTCCGAAGAGGAAGTACCAGGATTTTCTGGATATTGTCCTTTCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186377:ENST00000371901:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
NA
C2:
PF0006717=p450=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development