GgaINT1002650 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20776592-20777295:+
Coord C1 exon
chr8:20776592-20776743
Coord A exon
chr8:20776744-20777188
Coord C2 exon
chr8:20777189-20777295
Length
445 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
TTCAGCTCTTATTTACTCAGACA
3' ss Score
5.04
Exon sequences
Seq C1 exon
GCAAAACACCTACATCCAGGCTGTCTATGACCTGTGCCGCATGGTGCACGAGCGACTCCGCATCTTCCCCTACCACAATGACTTCATTTACTGGCTCAGCCCCCATGGATACCAGTTCAGGAAGGTTTGCCAGCTTGCTCACGACCACACAG
Seq A exon
GTATGCACTGTCATTATCCTCTCCCAAAGTTTTCATATAGAGTGTCTGGAAGAACCTTCAAGGAAGGGACGTGGCCGAAGTGTCTGCCACATCTGCTGTCTCCAGTCTCTGGCCCAAAGAAACCCATGCAGAGCTGAGAATCAGGCATCCCCTTGGGAGCCCCATGCATGTGTTATCCCCTTGCCCAAACTGTGATCATGCAGACCAAGGGAGCTGTGGTGAGCAAAGAAGTTTGTGGAAAAGGATGTGCTATTGCAACAACAGCCACATGCACATCACTTATTGTCACGCTCCTGAAAAAGTAGAACTACCTGCATGAAGAAATACACGTCAGTGCATTGGGAGCAGGGAGGAAGCCACCTCTTTGTCCAGCTTTGTGTTCAGGAGGTGATTTCCAGGTTCAGCATCTGCTGCCCTGCTGAGTCTTCAGCTCTTATTTACTCAG
Seq C2 exon
ACAAAGTGATCCAGGAGCGAAAGGAGTCCCTTAAAGATGAACGGGAGTTTGAGAAGATCAAGAAGAAGAGGCATTTGGACTTCCTGGACATTCTACTCTGTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688:ENSGALT00000017050:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.2=100)
A:
NA
C2:
PF0006717=p450=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAACACCTACATCCAGGCT
R:
AGCACAGAGTAGAATGTCCAGGA
Band lengths:
256-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]