HsaINT0044427 @ hg19
Intron Retention
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450, family 4, subfamily A, polypeptide 11 [Source:HGNC Symbol;Acc:2642]
Coordinates
chr1:47400125-47400826:-
Coord C1 exon
chr1:47400672-47400826
Coord A exon
chr1:47400232-47400671
Coord C2 exon
chr1:47400125-47400231
Length
440 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
3' ss Seq
TAACCATTGTTCTGGTACAGACC
3' ss Score
6.99
Exon sequences
Seq C1 exon
GAATTCTCAGTCCTACATACAGGCCATTAGTGACCTGAACAACCTGGTTTTTTCCCGTGTGAGGAATGCCTTTCACCAGAATGACACCATCTACAGCCTGACCTCTGCTGGCCGCTGGACACACCGCGCCTGCCAGCTGGCCCATCAGCACACAG
Seq A exon
GTTCTGTCTTTTCCTCTTGTCTCCCAGCCTTTCCCAGGCACAGCGAAAGAACTTGCCCTGACTCCTCAGCCAGAGAAGGCCCCTAGTAACCCTGCAGAACGCAGAACACACTCAGCCTGGGGAATTCCCTTGCTCAGGGGCTGGGAGCTGAGATGTGAGGGGCCAGATTCTGTGCCTTGGTTTATCAATGTCCCCACATGGAGATAACTGAATGAGACCCTGTCCAAACAGCATTCAAGAGGAGCCTCCATGAACTGTGCCACTGGCGGGAGGGGTGCCCTGCCTCACACAGTACTAGAGCTTCCACCCCTGACCCTGCACCCACACTCACATTCATGCTGAGATCTACCAGGCACCCACACTGGGGCAGTTGGGCAGCTAGGCCTCCTGGGGGCTGCTGACGGTCTCAGCTCTGCCTGGTAACCATTGTTCTGGTACAG
Seq C2 exon
ACCAAGTGATCCAACTGAGGAAGGCTCAACTACAGAAGGAGGGGGAGCTGGAGAAGATCAAGAGGAAGAGGCATTTGGATTTTCTGGATATCCTCCTCTTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048-CYP4A11:NM_000778:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.221
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.4=100)
A:
PF0006717=p450=FE(11.4=100)
C2:
PF0006717=p450=PD(5.3=16.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTCTCAGTCCTACATACAGGCC
R:
TTTGGCCAAGAGGAGGATATC
Band lengths:
262-702
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)