MmuINT0045331 @ mm9
Intron Retention
Gene
ENSMUSG00000028712 | Cyp4a31
Description
cytochrome P450, family 4, subfamily a, polypeptide 31 [Source:MGI Symbol;Acc:MGI:3028580]
Coordinates
chr4:115242791-115243474:+
Coord C1 exon
chr4:115242791-115242945
Coord A exon
chr4:115242946-115243367
Coord C2 exon
chr4:115243368-115243474
Length
422 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
3' ss Seq
TAATTGATGTTCTGGAATAGATG
3' ss Score
4.21
Exon sequences
Seq C1 exon
AAATTACAAGACCTACCTCCAGGCCATTGGGGACTTGAATAACCTAGTTCACTCTCGTGTGAGGAATATGTTTCATCAGAATGATACTATCTACAAACTTTCTTCCAATGGCCGCTTGTCCAACCAAGCTTGTCAACTTGCCCATGATCACACAG
Seq A exon
GTTCTGCTTGCACATTCTGTACCCCTCATTTCCTAGGATCAGCTCAAAAGGATTATTGATGATTTCTGAGGCACATCCAGACCCTTCAATGCACATCCCTTTAGGACCTGGATCACATACATGCTTGATACTTTAAAACTGACATTGTTGTGAGTTTGAACATCAGAATGCTAGGTACTATGTGACTATCATCATATTGATAATGTGTAGTGAGACTTGACCAAGCAAGTCAAGCAGAGCTTCCATTGCCCATGGTGCTAAAAGAGGTCTGATCTACATCAGATGTCACCAGTCCTCTAATGTTGCCCACTCCTTACTCGCTGACCTATATAGAGCACATATCTTCAGGCAAGGAGACACATGAAGCTACATGGGGCTACAATAGCTCTTAGGTCTATGTGATAATTGATGTTCTGGAATAG
Seq C2 exon
ATGGAGTGATCAAGATGAGAAAGGATCAGCTGCAGGATGAGGGAGAGCTGGAAAATATCAAGAAGAAGAGACGTTTGGATTTTCTGGATATCCTCTTATTTGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028712-Cyp4a31:NM_201640:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.157
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
NA
C2:
PF0006717=p450=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTACAAGACCTACCTCCAGGC
R:
TCTGGCAAATAAGAGGATATCCAGA
Band lengths:
262-684
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: