HsaINT1010521 @ hg38
Intron Retention
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]
Coordinates
chr1:46813912-46814315:+
Coord C1 exon
chr1:46813912-46814063
Coord A exon
chr1:46814064-46814208
Coord C2 exon
chr1:46814209-46814315
Length
145 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
ACTCTGTGCTTTTGGTTCAGACC
3' ss Score
7.83
Exon sequences
Seq C1 exon
GGACAGCAGCTACTACCTTGCAGTCAGCGATCTCACTCTGTTGATGCAGCAGCGCCTTGTGTCCTTCCAGTACCATAATGACTTCATCTACTGGCTCACCCCACATGGCCGCCGCTTCCTGCGGGCCTGCCAGGTGGCCCATGACCATACAG
Seq A exon
GTGGGCCTTTCCCACAAGGCTCACCTCTAGGAAGCCTGGGTTCCTCCTCCTGGCCCCTCTATGCCCCCTCCCATTATAGGACCCCAGTTCCCCTTTGGACAAAAGATGGCTTCCCAGGCAGTGACACTCTGTGCTTTTGGTTCAG
Seq C2 exon
ACCAGGTCATCAGGGAGCGGAAGGCAGCCCTGCAGGATGAGAAGGTGCGGAAGAAGATCCAGAACCGGAGGCACCTGGACTTCCTGGACATTCTCCTGGGTGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973:ENST00000271153:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.2=100)
A:
NA
C2:
PF0006717=p450=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCAGCTACTACCTTGC
R:
ATGTCCAGGAAGTCCAGGTGC
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains