RnoINT0044540 @ rn6
Intron Retention
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134514658-134515048:-
Coord C1 exon
chr5:134514897-134515048
Coord A exon
chr5:134514765-134514896
Coord C2 exon
chr5:134514658-134514764
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CACTTATGCTCTTGGTCCAGATG
3' ss Score
6.24
Exon sequences
Seq C1 exon
AGACAACAGCTACTACCTGGCGGTCAGTGACCTCACACTGCTGATGCAGCAGCGCATCGACTCCTTCCAGTACCATAATGACTTCATTTACTGGCTCACTCCACATGGCCGCCGCTTCCTGCGGGCCTGCAAGATAGCCCATGACCATACAG
Seq A exon
GTGGGCCTTTCCCTCAAGCCTTCCCTCACCCCTCCACACCAACTAGGAAGCCGTGGTTCTTCCTCTGGGATCCTCTGTACCCTTCTTGATGCAGGGCCAGAATAGTCAATGACACTTATGCTCTTGGTCCAG
Seq C2 exon
ATGAGGTCATCAGGCAGCGGAAGGCAGCACTGCAGGATGAGAAAGAGCGGAAAAAGATTCAGCAGCGGAGGCACCTGGACTTCCTGGACATTCTCCTGGGTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078:ENSRNOT00000013321:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.2=100)
A:
NA
C2:
PF0006717=p450=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACAGCTACTACCTGGCG
R:
ATGTCCAGGAAGTCCAGGTGC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]