HsaINT0044490 @ hg38
Intron Retention
Gene
ENSG00000171954 | CYP4F22
Description
cytochrome P450 family 4 subfamily F member 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr19:15548108-15549202:+
Coord C1 exon
chr19:15548108-15548241
Coord A exon
chr19:15548242-15549137
Coord C2 exon
chr19:15549138-15549202
Length
896 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
GATCCCATCTTTCCCCACAGGAA
3' ss Score
11.86
Exon sequences
Seq C1 exon
GGACGATCTGACTCAGCTGCCCTTTACAACTATGTGCATTAAGGAGAGCCTGCGCCAGTACCCACCTGTCACTCTTGTCTCTCGCCAATGCACGGAGGACATCAAGCTCCCAGATGGGCGCATCATCCCCAAAG
Seq A exon
GTGCCTACCATGTTCCGCCTGCTGCTGGTGCACTGCCTCCAATGATGTAGCTGCTCTATTGTCCACAGGGGCCTGGCTATGCCTGCCCCAGGTGCACTATCCCTGCAGATGGGATAGCTCTCTGTGTGCCTGTTGCTTCTGGGGTGTTGGAGAAAACCCAGTTGTGTGTGCAGGGAGATAGAGCCGGGTGAGTCCAGGTGGAAAGGAAGGAGGCAGTGTCGCAGGGATGGGCCTGTGAGGGTGCAGTTGGGGAGGGTCAGTTTCATTCAGTTGCCAGTTACTCCCTGGAGACCAAGCCCTGCCTTGGTTGATACAGGGGACCCTGGCTCAGGTTTTGAGTATTGCCCTTTCTGGGGGAGATACAGCAGGGTGCAGACATTCCCAGGCGTATGGAATCAGGAATGGGCTAAAGGGAGAGACAGGGGCTGGAGTAGCTCCAATATGGAGAGGAATGCAGGGAGGGCTGCCTGGAGGAGGGAATGTGGGAGGTGAGGCTTGGAGTGTGGAAGTGAAAGAGTGAGCATGTTTATGGAGTAGAGCCTCAGGATGCAGATTTTGAAAGGCCTTGAGTGCCAGGTGATGGCGCTTGAACTCAATCCTGGGGGCAGCAGGGAGCCAAGGTAGGTGTTTGAGCTGAAGAGGAGCAATGTCAGATCTGCGAGTAAGAAAGATCCCTATGTGGCCAGCTTGGCAGCCAGAAAGAAGATGATAGGTTCCTCTTAGGGAAAGGTGGGAAGAGTGGATGGGGCAGCAGAATTTTTTAGAGAAGGATGGACAGAAGGTGGTGGCAGATGGCTCATGGGAACATCATGGCTCTAGGGAGACCCAAGTTGGGGGATGTTTCTGGAGGAGGCCCTGGCTCCCCTTGGCCCCACTGATCCCATCTTTCCCCACAG
Seq C2 exon
GAATCATCTGCTTGGTCAGCATCTATGGAACCCACCACAACCCCACAGTGTGGCCTGACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171954:ENST00000601005:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGATCTGACTCAGCTGCC
R:
CTTGGAGTCAGGCCACACTGT
Band lengths:
198-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development