RnoINT0044589 @ rn6
Intron Retention
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14510612-14512836:+
Coord C1 exon
chr7:14510612-14510745
Coord A exon
chr7:14510746-14512771
Coord C2 exon
chr7:14512772-14512836
Length
2026 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
TGTCGCCCCCCACCCCCCAGGAA
3' ss Score
10.27
Exon sequences
Seq C1 exon
GGATGACCTGACGCAGTTGCCCTTCACCACCATGTGTATCAAGGAGAGCCTTCGCCAGTTCCCGCCCGTGACCCTCATCTCTCGTCGCTGCACAGAGGACATCAAGCTGCCCGACGGACGCATCATTCCCAAAG
Seq A exon
GTGCCTGCTGTCTCCTTTACTGCTGTGGTGCTGTTCCCAGGGGTCTAGTCATGCCCGCTGTGGGCGCAGGGTCCCTATGATGGGAAGGATCCGATGGGAAGGATCCCTGGATATGTGTTGCTTCGGGAGTGACAAGGATGTCTCAGTTTCATTTCTTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTCAGTTTCATTTCTTGTCGAAGCGATAATATAACCCAACGAAAGCAACTCCAGGGGTAGAGCGTTTGTCTGGCTCACGATTCCCGGTTATAGCCGGTCGTGGCAGAGGAGTCAGAGTGACAGAGACATGAAACACTTAGTCATATTGCATCACAGACAAGAGCAAAGAGCGGTGGATGGCTACACGCATGCACGCCAGCGTTCAATTCTCTTGTCTTTATTGGGTCCAGGCCCTCGCCCGTGCAAGGGTGCCACCCACATTCAGTATGTCTTTCTATCCTAAGTAATCAATGAAGGAAATCTCTTATGGGTGCTGGAGACATGGCTGGGCACTGTAAGAGTACTGGCTCACGACTATCTCTAACTCTGGCTCTAGGGGATCCAGCACCCTGTTTTTGACTCTGTCGGTACCAGGTATGCATGTGATGCACATGCAGGTAAAACACTCACTTACACAATAAACAAATAAACCTAAAAATTAAAAAATGAAAGCACTTGCTGTTCCTCCAAAGGGCCTGAGTTGAGGTCTCAGCTCCTCGCTGGACAGTTCACAACCACCTATAACTCCAGTACCAGGAAATTTGACGCTCACTTTCTGACCCCCACACACGTGTCGTGTATACACACACTCTCACACATGGAGTATATATAAAATAGAAATATTAAAAAGAAGAAAAAGTCTTACTGGCATGCCTGTAGATCAATCTAATCTAGGCCATCCCTCTTGGAGACTCCCTTTTCAGGTGATTCTAGAGTGCATCAAGTAGACCAAACTAATCATCCGAGGGAAACCTAGGTGTGTGTAGAGGAGGTGGAAGTGCTTGTATCCAGACGGAAAGGGAAGTGTGGAGGAGGCCATGCTAGATCTGGGTGGGCATTAATGGTAGAAGGTCAGCATCTTTTAAAGAATAGGACGATGATGATGATGATGCGGAGGATGATGATGATGATGATGATGACGACGACGACGACGATGACGGTGGTGGTGGTGGTGTGTGTGCATACATGCATGCACAAATACACACACACACACACTACACACACACACACACACACACACACACACACACACGAAGGTCAGAGAACAGTTTTCAGCAGTCTATTCTCTTCTTTCACCATGAGTTCTAAGGCTTGAACTCTTGTCCTAGGGATTCCGTAGGAAGCACTTTTACGTGCTAAACATTTGGGGAGGGGCTGGACCCGAGGGTCAGTTTTGTTGTCATCTAACTGCTGAGAACCGAGCTGTAATTATGGTGACACCAGGAGCTCAGGCCTGAGTACCATCTAGTCTCTAGGGAGAGGCCCCACGTATTCCTGTCCATGTAGCATCGGGGATGGACAAAATGCAGACAGGCTTGAGAAGCCCTGGATGGAAGGCCACTTTCTCCAAGATGTAAGAAGAGCAAGTGTGTTTATGGAGCAGAACTTCAGAGTGCAGATGATGAACAACACATCCAACACCTGACTCTATCCAGAGGGAAGAAGGGAGCCAAGGGAGGTGAAAGGAACGACGACAGTCCTATGAGCTAAACTGTCAGACTGTGTGGACAGTGAGGCCATGGGGAAAGAGGCAGAGAGAGTGGACAGGGCAGCACTTGTCTTCGCAGAAGGACGGACAGGATGTAGTGGTAGCTGGCTCTCAGGGATCCTATGACTGAAGGAAGAATTGTGTGTGTGTGTGTGTGNNNNNNNGTGTGTGTGTGTGTGTTTCCAGACACTCCCTTGGGCTCCACTGATTCCAAATGTCGCCCCCCACCCCCCAG
Seq C2 exon
GAATTATCTGCTTGGTCAGCATCTACGGGACCCACTACAACCCCTTAGTGTGGCCTGACTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478:ENSRNOT00000007548:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]