BtaINT0046307 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047933 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr7:8631319-8632424:-
Coord C1 exon
chr7:8632291-8632424
Coord A exon
chr7:8631384-8632290
Coord C2 exon
chr7:8631319-8631383
Length
907 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
3' ss Seq
GACCCTCCCCCTCCCCACAGGAA
3' ss Score
13.74
Exon sequences
Seq C1 exon
GGACGACCTGACCCAACTGCCCTTCACCACCATGTGCATCAAGGAGAGCCTCCGCCAGTTCCCACCTGTGACCCTGGTCTCCCGCCGCTGCACGGAGGACATCAAGCTCCCAGACGGACGCATCATCCCCAAAG
Seq A exon
GTGCCCCCTTTGTGCTCCCTGTTGCCCGCTTGCTCTGTTGCCTATGGGGGTCTGGCCATGCCTGCCCCAGGTGCGTTATCCTTGTAGGCAATTTATAGCCTGTTGCTTCTGGGGGTGGTGAGGAGATCCTGTTGTGTGTTTGTATCGGGGAGATAGAGGTGGGTGGATCCAAGCAGAAAGAAAGGAGTAGGTATGATGGGGTGGGCTCTGTGAGAGTGCAGGTAGAGAAGGATTGGCTTCATTCTGTTGCCAGATATCCCCTGGAGGCCAGGTCCTATCCTGGGTGAGGCTGGGCATCTAGTGAAGCCTCATCCCCAGCTCCAAGCCTTGAGTACCAGCCAGTCTGGGGAAGATTCAGCAGGACATGGATGTTCCCAGTCACATGGGGTGAGGGATGGGCTACAGGGAGGGACAGGGACTGGAGCAGCCCCAGATAAGGAGTGATGACTGTATCTGGCATGGAATGCAGGGAGGGCTGCCTGGAAGAGGGAACATGAGAGGTGAGCCTTGGGAAATGAAAGAGAGAACATGCTTATGGAGCAGAGCCTCAGGGTACAGATAGTGAAAGAAGTGGAATGTACGGTTGAGGCACTTGAACTTAATCCTCGGGGTGGTAGGGAGCCATGCGAGGTATTTGAGCTGTGGAGGAGCAATGTCAGATGTGTGAGTAAGATCCCTGTGTGGCCAGGATGACAGCTTGGAAGAAGGCTATGGGGACCTCTAATGGAGAAGCAAGGCAGTAGATGGTGAAGCAGAAGATTTTAAGGAAGGATGGGCAGGAAACGGTGGCAGATGGCTTGTGGGAATTGTGTGGCTCTGGAGAGAGCTGGGGGAGGGGTAGGTCTCCAGAGGAGGTCCTGGTTTCCCTCATTTCTACTGACCCCACTGACCCTCCCCCTCCCCACAG
Seq C2 exon
GAATCATCTGCCTGGTTAGCATCTATGGGACCCACTATAACCCTGCAGTGTGGCCTGACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047933:ENSBTAT00000066325:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.7=100)
A:
NA
C2:
PF0006717=p450=FE(4.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACCTGACCCAACTGC
R:
CTTGGAGTCAGGCCACACTG
Band lengths:
198-1105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]