HsaINT0044509 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr19:15870144-15871707:-
Coord C1 exon
chr19:15871625-15871707
Coord A exon
chr19:15871231-15871624
Coord C2 exon
chr19:15870144-15871230
Length
394 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTCCCCACTCCCACCCGCAGGAA
3' ss Score
9.76
Exon sequences
Seq C1 exon
GTCTACAACCCCTTCCGCTTCAACTCAGAGAACAGCAAGGAGAGGTCACCTCTGGCTTTTATTCCCTTCTCTGCGGGACCCAG
Seq A exon
GTAAGGGCCACCTGTGTCTGGTATGGGGATGGGGTGATAGGTGCGAGGGTCGAAAAAGGGGGAAGTTTGCAGATGGTCCCAGTTCCAGTTCTCTTTCCCTCCATTCCTTCACAGTTTATGGGAAAATGTCCATAGAATGGGGGTGAGTAGGTCCTAGAGGGTCCGCAGAGTGCTCAGAATCCCCTCCTCCATCTGCTGGTCTGAGCTGGGAGCTGGAGTCTGGCCCAGGCTCTGGGGGACATGCAAACCCACAGGGGGGTCCCACGCATGCTCAGCCCCTCTCTATCTCTCAGGCTGATCTGGGTGCGGTTGAGGATCCCGGGCCAGGTTTCCGGCGTGATGGGGCCCAAATGCGGATCCTGGGCGCAGTCACAGTCCCCACTCCCACCCGCAG
Seq C2 exon
GAACTGCATCGGGCAGGCGTTCGCCATGGCGAAGATGAAGGTGGTCCTGGCGCTGACGCTGCTGCGCTTCCGCTTCCTGCTGGACCACACGGAGCCCCGCAGGAAGCCGGAGCTGATCATGCGCGCTGAAGGAGGACTTTGGCTGCGAGTGGAGCCCCTGAACGCGGGCTTGCAGTGACCCTCTGACCCATCCACCTGCCTTTCCAGATTCTCCGGAATAAAACTGTGCCTGGGCCTCTACTGACAGCCAGCAGGGGGCTCTTGAGGACTGGGAGGCGTCAGGGAAGGGGCATAACCTGGGCGGGTTAGGTGGGGTGTTGTCACTGAACCCAAGAACCTGACTGCCTCTTTGGCTGATCATAGGGCCTCCATGCTTTGGGAGTGTCCCAAGACCGAGGTCCTTAGCCAGCTCAGAACACAGGGATAGAAGGGTGCAGCTTCTATCCTGGTAGGCTTTTAGGAATTCTTAGCTCCCTTTCTTGCCAGCATCCCACCCTACGTCTCCCCCTTCAAGTTGATCGCTTTTGTGAACCCCCTTCCCCTACCTTCAGACAGCTCCATTTTTTTTCCTCTTTTGAACCCTCTGACTCTGCCCAGGCAGCCTGGCCAACAGATACTACCTGAATCCTCCCCCTACTCTCCTCTGCTATGTGCCAGGCACCCTCACACATGTCAGGGGTTCAGCACATCCCCACCCTTTCACCTCTAGGTTCCTCCTTCATTCCCATCACCTGCCCATGTTGGGGTGGGGTGCAGTCAGGGCCATCCTGTTTGACCCTTGAGATCCAAAGCCAGATGACTGGAAGCAAAACACCATCCCAAAGGCATGACATCTGGAACCAGACTACTTGGGCTCAAGTCTCAGCTTTGCTGTGTGGCTTGGGCAAGTTAATTCTCCTCTCTTTTCTTCAGTTTTCTCAAGCATATAATGGGGACAACAATGCTACCTTTGTCAGGGTTTTCCTGAGGACAAAATATGAGAGACTCAGAACTGTGCCTGGTGCACATTGAATGCTCAATAAATACGGCCATTATTACCTGCTCTCTGAGAAAGTCTGGTTAATAAAGCATGTTGCCTTTCAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
-CYP4F24P:NR_033864:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCCTTCTCTGCGGGACC
R:
GTGACAACACCCCACCTAACC
Band lengths:
348-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)