Special

HsaINT0044509 @ hg19

Intron Retention

Gene
NA
Description
NA
Coordinates
chr19:15870144-15871707:-
Coord C1 exon
chr19:15871625-15871707
Coord A exon
chr19:15871231-15871624
Coord C2 exon
chr19:15870144-15871230
Length
394 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTCCCCACTCCCACCCGCAGGAA
3' ss Score
9.76
Exon sequences
Seq C1 exon
GTCTACAACCCCTTCCGCTTCAACTCAGAGAACAGCAAGGAGAGGTCACCTCTGGCTTTTATTCCCTTCTCTGCGGGACCCAG
Seq A exon
GTAAGGGCCACCTGTGTCTGGTATGGGGATGGGGTGATAGGTGCGAGGGTCGAAAAAGGGGGAAGTTTGCAGATGGTCCCAGTTCCAGTTCTCTTTCCCTCCATTCCTTCACAGTTTATGGGAAAATGTCCATAGAATGGGGGTGAGTAGGTCCTAGAGGGTCCGCAGAGTGCTCAGAATCCCCTCCTCCATCTGCTGGTCTGAGCTGGGAGCTGGAGTCTGGCCCAGGCTCTGGGGGACATGCAAACCCACAGGGGGGTCCCACGCATGCTCAGCCCCTCTCTATCTCTCAGGCTGATCTGGGTGCGGTTGAGGATCCCGGGCCAGGTTTCCGGCGTGATGGGGCCCAAATGCGGATCCTGGGCGCAGTCACAGTCCCCACTCCCACCCGCAG
Seq C2 exon
GAACTGCATCGGGCAGGCGTTCGCCATGGCGAAGATGAAGGTGGTCCTGGCGCTGACGCTGCTGCGCTTCCGCTTCCTGCTGGACCACACGGAGCCCCGCAGGAAGCCGGAGCTGATCATGCGCGCTGAAGGAGGACTTTGGCTGCGAGTGGAGCCCCTGAACGCGGGCTTGCAGTGACCCTCTGACCCATCCACCTGCCTTTCCAGATTCTCCGGAATAAAACTGTGCCTGGGCCTCTACTGACAGCCAGCAGGGGGCTCTTGAGGACTGGGAGGCGTCAGGGAAGGGGCATAACCTGGGCGGGTTAGGTGGGGTGTTGTCACTGAACCCAAGAACCTGACTGCCTCTTTGGCTGATCATAGGGCCTCCATGCTTTGGGAGTGTCCCAAGACCGAGGTCCTTAGCCAGCTCAGAACACAGGGATAGAAGGGTGCAGCTTCTATCCTGGTAGGCTTTTAGGAATTCTTAGCTCCCTTTCTTGCCAGCATCCCACCCTACGTCTCCCCCTTCAAGTTGATCGCTTTTGTGAACCCCCTTCCCCTACCTTCAGACAGCTCCATTTTTTTTCCTCTTTTGAACCCTCTGACTCTGCCCAGGCAGCCTGGCCAACAGATACTACCTGAATCCTCCCCCTACTCTCCTCTGCTATGTGCCAGGCACCCTCACACATGTCAGGGGTTCAGCACATCCCCACCCTTTCACCTCTAGGTTCCTCCTTCATTCCCATCACCTGCCCATGTTGGGGTGGGGTGCAGTCAGGGCCATCCTGTTTGACCCTTGAGATCCAAAGCCAGATGACTGGAAGCAAAACACCATCCCAAAGGCATGACATCTGGAACCAGACTACTTGGGCTCAAGTCTCAGCTTTGCTGTGTGGCTTGGGCAAGTTAATTCTCCTCTCTTTTCTTCAGTTTTCTCAAGCATATAATGGGGACAACAATGCTACCTTTGTCAGGGTTTTCCTGAGGACAAAATATGAGAGACTCAGAACTGTGCCTGGTGCACATTGAATGCTCAATAAATACGGCCATTATTACCTGCTCTCTGAGAAAGTCTGGTTAATAAAGCATGTTGCCTTTCAAGATA
VastDB Features
Vast-tools module Information
Secondary ID
-CYP4F24P:NR_033864:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

3' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCCTTCTCTGCGGGACC
R:
GTGACAACACCCCACCTAACC
Band lengths:
348-742
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains