MmuINT0045444 @ mm10
Intron Retention
Gene
ENSMUSG00000090700 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:MGI Symbol;Acc:MGI:3645508]
Coordinates
chr17:32675904-32676687:+
Coord C1 exon
chr17:32675904-32675986
Coord A exon
chr17:32675987-32676302
Coord C2 exon
chr17:32676303-32676687
Length
316 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCTACCCCATCCTCCCACAGGAA
3' ss Score
11.14
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGTTTTGATCCAGAGAACATCCAGGCTAGATCACCTCTGTCATTTATTCCCTTCTCAGCGGGGCCAAG
Seq A exon
GTGAGGCCAGCAAGCTCAAGGTCGTGAAGTAGGGTCTGGGCCTGGTAGTGAGGAAAGCTGAATTGAGATGGTAGAGGTTTCATCAAGGTTTGGAGAATCTATTTGGGAAGTTCCAAGAGCGGCCAGGGATGGCAATAGCTGTGGGGCTCCCTCCCGTGGGTTGTATTGTGGCCTAAACTCGAATGAAGTATTAGTGGTGTGCTAGGTGTATTAGCATCTCTCAACGTGACCGATACTGGGTCAGGTTGGGTCTGAGAATGCCTGTCTGGGTCCCTGCAAAGGGCACAGCCACAGTCCCTACCCCATCCTCCCACAG
Seq C2 exon
GAACTGCATTGGACAGACTTTCGCTATGAGCGAGATGAAGGTGGCGCTGGCGCTGACTCTGCTGCGCTTCCGCATCCTGCCAGATGACAAGGAGCCACGCCGGAAGCCAGAGCTGATCCTGCGCGCAGAGGGCGGGCTGTGGCTGCGGGTGGAGCCGCTGAGCACCCAAGCACAATAACCCATCTACTTTGCCCTGGCTTTCCGTAGTAAGTAAATAGGCGTGACTCTGCTCTTGAAGATTGCAAAGCACAAACAGTGCTGTCACCCGGCAAGCAGGGGCTGCTAAGGATCCTCCCAGTGGTCAGAGTTATGGAGTCCAGCTAGTTGATTTGAACCAAAGATCCCTGACTTCTCTGGATGGTCACAGGCCCAACAGCTCCTAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090700:ENSMUST00000165061:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGCTAGATCACCTCTGTCA
R:
ACCACTGGGAGGATCCTTAGC
Band lengths:
350-666
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types