HsaINT0044513 @ hg19
Intron Retention
Gene
ENSG00000228314 | CYP4F3
Description
cytochrome P450, family 4, subfamily F, polypeptide 29, pseudogene [Source:HGNC Symbol;Acc:2647]
Coordinates
chr19:15769537-15771570:+
Coord C1 exon
chr19:15769537-15769619
Coord A exon
chr19:15769620-15770029
Coord C2 exon
chr19:15770030-15771570
Length
410 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTCCACCTCCCTCCCCAAGGAA
3' ss Score
8.48
Exon sequences
Seq C1 exon
GTCTATGACCCCTTTCGCTTTGACCCAAAGAACATCAAGGAGAGGTCACCTCTGGCTTTTATTCCCTTCTCAGCAGGGCCCAG
Seq A exon
GTAAGAGCGGCCTGTGTTTGAGGCGGGGACGGGGAGATAGGTGCAGGGGTCTGGGCATGACAGTGGGGAAAAGGGGGACATTGTAGACGGTCCGAGTTCCAGCTCTCCTTCCCTCACCTCCTCTGGAGTTTATGGGAAAAGGCCCACAGAGTAGGATTGGGTTGGTCCTAGAAGGATCCCTAGTGAGCTCAGAGCTCCCTCCTACCCCACCTTGGTCTAGGCTGGGGGGTTGGAGCTCGGCTAGGCTCGCAGGATATGCAAGCCCACATGGGGATCCAGGCACGGATACCCCCTTCTCTGTTCCTCAAACTGCTCTAGGTGGGGTTGGGTGTCCCAGGCCAGGTTACCGGCTTGATGGGGCCAGGATGGGGCACCTGGGTGCAGTCAGAGTTTCCACCTCCCTCCCCAAG
Seq C2 exon
GAACTGCATCGGGCAGGCGTTCGCGATGGCGGAGATGAAGGTGGTCCTGGGGCTCACGCTGCTGCGCTTCCGCGTCCTGCCTGACCACACCGAGCCCCGCAGGAAGCCGGAGCTGGTCCTGCGCGCAGAGGGCGGACTTTGGCTGCGGGTGGAGCCCCTGAGCTGAGTTCTGCAGAGACCCACTCTGACCCCACTAAAATGACCCCTGATTCATCAAAAGTGAGGCCTAGAATTACCCTAAGACCCTGTTCCACAGTCCTGTATTCCATCCTAGATATCTACTCAAAATAATTGAGACAAGTGTTCAAACAGAAAGACGCTTGTGCGTGAATGTTCATGGCAGCCCTATTCACAGTAGCCAAACGATGAAAACAACCCCAAGCTATATATTACCAGATGAAAGGATAAACAAAATATGGTCCATCCATACAATGGAGTATTACACAGCCATAAAAAGGAATGAAGCAGTGATCCCCACTACACTGTGGATGAACCTTGAATGCATGATACTGAATGAAAGACATCAGATGCAAAAGGTCACATAGTGTACTGTCCTTTTATATGAAATTTCCAGAACAGGCCAATCTGAAGAGATGTATAGTGGATTGGTGGCTTTCAGCAGCTGTGGGGAGGTGGGACTGAGGAGCGACTGCTAATCAGGATGGGGTTTCCTCCTGGGATGGTGAAAATGTTCCGGACCTAGATAGTGATGAAGGTAGCACGACACTGTGAGTGCACTAAATGCTATTGAATTGGACACTTTAGAATGGTTGAAATAGTGATTTTTATGTGAATTCTACCTAAACATGCTATTACAGCTCATATATACTTTTTCCATCTGGATTCTTCACAAAAGAATATGTTGTGAGCATCTTTCCATGATATTAAATCATCTTAGGAAACATTATTTTGTGTTCTTCAAAATGTGCATGTTAAGTATTCAAATCAGTCTTAAATTTTTAAAAATATGTAATTTTAGAAAATAATTTAAAAGGTTTTGTTTCAGTTTGTAAGATTTCTTTTCTGGCACTTTAATGGCTTGAGGTATCATTATCAGTTACAAATTGAGTTATTCTTCATCAAATGACTTTTGGAGTAGAGATTTTATTTTTATAGCAATAGATGCACAGATATTCCTGTAAGATACAGGTGTGGTTAGACACTTTTCTAGAACAGGCATGCCCTGCAAACTCCACAGACACTGACTGTTTTTGTCCTATTAAGAAGTAGACCACTGAGAAGGGAGAAGGTGACATTTTAGCTTTCCCAGGTAAAAGTGGTTTTCATCCTCACACCAATTTTATGGACTGGACGTTAACTCTCTTGCTCAAGGTCACTCTGAGTGGAAGAGTGGGGATAAATCTGGTTCGTTTGGCATCAGAGGCCATGACTTTTCCTACCACAGAAGTAATTTTCAAAGTAAGTCTCTGCCCTAGGCACATCAGATCACCTGGGGACCACTCCAGAGTGAGTAGACAAGACTTTGACAGGGGTGCCTAATTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTTGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000228314-CYP4F3:NM_000896:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACCCCTTTCGCTTTGACC
R:
AGGATGGAATACAGGACTGTGGA
Band lengths:
351-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)