BtaINT0046290 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015735 | CYP4F2
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075322]
Coordinates
chr7:8431773-8432859:-
Coord C1 exon
chr7:8432777-8432859
Coord A exon
chr7:8432371-8432776
Coord C2 exon
chr7:8431773-8432370
Length
406 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GACACCACTCCTGCCTGCAGGAA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACATCAAAGGGAGGTCACCTCTGGCTTTTATTCCCTTCTCAGCAGGTCCCAG
Seq A exon
GTGAGGACATTGGACATTTGAGGTGGGAATGCGGTGGTGGGGGTGGCAGCATCAGGGACTGAGATTCCAGGCATGACTGTCAGGCAGGGAGGTGGGAAAAATGAAGATGGTCAGAGTTCTGGCTTTCCTTCTCTCCCCTGCCCTGGAGGTGACAGATAAACGTTTGGGGAATGGAGGTGGGCCCAAGGAGGGGCCTGCAGTGTGCTGAGAGCCCTTTTCCTCCCGCGTTCAGAACTGGAATCTGGACCAGGCCCAGGGGATATGCAAACCCATGTCCGCAGTCCCAGGCATTGTTCGACTTCTCTGTCTCTGCAGATGGGGATGGGGGTTGTGGGCCAGATTTCCGGCTTGGTGGGGCTGGGATGAAGGTTCAGGGAATAGTCAGAGACACCACTCCTGCCTGCAG
Seq C2 exon
GAACTGCATTGGGCAGACATTCGCCATGACTGAGATGAAAGTGATCTTGGCGCTCACCTTGCTGCGCTTCCGCGTTCTGCCGGACAAGGAACCGTGCCGGAAGCCAGAGCTGATCCTGCGCACCGAGGGAGGACTCTGGCTGCGGGTGGAGCCGCTGAGCGCAGGCCAGCAGTGACCCAGCACCTTCTCTCCTGAGATCCTCTCTGACCCTAAACACCTCACGTGCAGATTGGAAATCAAACTTCGTGGTCACCTCTGCCCTAGTCTCGTCTAGAAGACAGCAAGGAGCACATGGGATCTGCTAGGTTCCAGGCAGGTGGGGGTTGCTGTAAACCTGGTGGCCTTTAGCGGGGCGGCTCAGAAGGGAACTTGGATCCTAAGTGTAAGACTACTCATTAGGAAAGTCCAACTGCTTGATGCAGAGAGGGTCAGATGACCTTGGATTTGCTCCCTGACATGGTAATATAAAGGTCACCGTCCCAGTCTGCCACTTACTAGTTGTTTGGCTTAAGAAAATTGTTTACCTCTCAGTTCCTTTATTACATAATTGTAGCCACTTTACTGGGCTGTTGGGGAGATTGAATAAACAAGCATATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015735:ENSBTAT00000020890:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=83.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGCTTCGACCCAGAAAA
R:
GACGAGACTAGGGCAGAGGTG
Band lengths:
343-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]