RnoINT0044604 @ rn6
Intron Retention
Gene
ENSRNOG00000043344 | Cyp4f40
Description
cytochrome P450, family 4, subfamily f, polypeptide 40 [Source:RGD Symbol;Acc:1559596]
Coordinates
chr7:14879506-14880084:+
Coord C1 exon
chr7:14879506-14879588
Coord A exon
chr7:14879589-14879906
Coord C2 exon
chr7:14879907-14880084
Length
318 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCTACCCCATCCTCCCGCAGGAA
3' ss Score
11.33
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGTTTTGATCCAGAGAACATCCAGGCTAGATCGCCTCTGGCATTTATTCCCTTCTCGGCAGGACCCAG
Seq A exon
GTGAGTCCAGCAAGCACGTGGTCGTGGAGCAAAATCTGAGCCTGGTAGTGAGAAAAGGTGGATGGAGATGGTAGGGGTTTCACCAAGGTTTGGAGAGCCTCTTTCGGAAGTTCCAAGAGCAGCCAGGGATAGTGGTGGTGTTGCGGCTAGTTTGTATTGTGGCCTAAACTCTGGGCAAGGTTCGAATTAAGCATTAGTGGTGTGCTCTGTATATTAGCATCTCTCAACCCGACGGGACTGGGTCAGGTTGGGTCTGAGGGTCCCTATCTGGGTCCTGGAAAAGGGCACAGTCAGAGTCCCTACCCCATCCTCCCGCAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCTATGAACGAGATGAAGGTGGCAGTGGCGCTGACGCTGCTGCGCTTCCGCGTCCTGCCCGATGACAAGGAGCCGCGCCGGAAGCCGGAGCTGATTCTGCGCGCGGAGGACGGGCTGTGGCTGCGGGTGGAGCCTCTGAGCGCCCAAGCATAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043344:ENSRNOT00000066654:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=83.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCCTTCCGTTTTGATCCA
R:
TACTATGCTTGGGCGCTCAGA
Band lengths:
254-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]