BtaINT0007897 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BHD5]
Coordinates
chr7:8531873-8532514:+
Coord C1 exon
chr7:8531873-8531955
Coord A exon
chr7:8531956-8532336
Coord C2 exon
chr7:8532337-8532514
Length
381 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCCCCCGCTCCTGCCCACAGGAA
3' ss Score
12.26
Exon sequences
Seq C1 exon
GTCTATGACCCCTTGCGCTTCAAGCCAGAAAACATCAAGGGGAGGTCACCGCTGGCTTTTATCCCCTTCTCAGCAGGTCCCAG
Seq A exon
GTGAGGGCATTGGGCATTTGAGGTGAGGATGGAGTAGTGGGAGGCAGGGGTCTGGGACTAAGATTCCAGGCTTAACTGTAGGGGCCAGGAAGGGGGAAAATTTAAGACTCCCCTCCCCCAGACAAAATGGCAAGGGCCTAGGGAATGATAGGAGGCACAAGGAGGGGTCCACAGTGTGCTGAGGGGTCGGTTCCCCTGTGTTCTGGTCTGAGTTCAGGACTGGAGTGTGGGCAAGGGTCTGGGAACACGCAAGCCCACACGGGGGTTCCTGGCATGGTTAGCTTCCTTCTCTACCACTGTATGTGTAAGTTGTGGGCCGGGTGCTATGGGGCCCAGGTGAGGGTTCCGGGTGCAGTCAGAACCCCCCGCTCCTGCCCACAG
Seq C2 exon
GAACTGCATCGGACAGACATTCGCCATGACCGAGATGAAGGTGGTCCTGGCACTCACACTACTGCGGTTCCGCATCCTGCCAGATGAGGAGGAGCCTTGCCGGAAGCCAGAGCTGATCCTGCGGGCGGAGGGCGGACTTTGGCTGCGGATGGAGCTGCTGAGCACAGGGCAGCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039319:ENSBTAT00000036382:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATGACCCCTTGCGCTTC
R:
CATTGCTGCCCTGTGCTCAG
Band lengths:
260-641
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]