HsaINT0044525 @ hg38
Intron Retention
Gene
ENSG00000186526 | CYP4F8
Description
cytochrome P450 family 4 subfamily F member 8 [Source:HGNC Symbol;Acc:HGNC:2648]
Coordinates
chr19:15628761-15629472:+
Coord C1 exon
chr19:15628761-15628843
Coord A exon
chr19:15628844-15629192
Coord C2 exon
chr19:15629193-15629472
Length
349 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCTTCCACCTTGGCCCCCAGGAA
3' ss Score
9.3
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTCGACCCAGAAAACGCCCAGAAGAGGTCACCTATGGCTTTTATTCCTTTCTCGGCGGGGCCCAG
Seq A exon
GTGAGGCCAGGGGGTGTCTGAGGTGGGCATGGGCTGAGGGTGGCACAGATGGCTGCCTTGTCAGATGCCTGACTTGTAGGACCACGTGTTTCTGTGATAGGGGTTTTAAAGAAGATCCTAGGAAAAAGGGTGTGCTCAGAGCCTCCTGCCCCGTCTGGTTTCAGTTGGGGCTGGGGTCTGGGCTAGGCTCTGGGAATATGCAAGCCCACATGGGGGTCCCAGACCCAGCTTCCCCCCTGTCTGCCCAAGGTGATCTGGGTGGGGTTGGGGGTTCCGGGCCTGGTTCCTGGCGCAGTGGGGCCGGGATCTGGGTCCTGGGTGCAGTCAGACCTTCCACCTTGGCCCCCAG
Seq C2 exon
GAACTGCATCGGGCAGAAGTTCGCGATGGCAGAGATGAAGGTGGTCCTGGCGCTCACGCTGCTGCGCTTCCGCATCCTGCCCGACCACAGGGAGCCACGCAGGACGCCGGAGATTGTTTTGCGTGCGGAGGACGGACTTTGGCTGCGAGTAGAACCCCTGGGCTGAGGCCTGCAGTGACCCACCCACCTACCTTTGCATCACCTACCTTTGCACCAACTACCTTTTCAGATTTCCGGTAATAAATCTGTGTTGGCCCCTGTGCCTCAGTCCCGCGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186526:ENST00000325723:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(35.0=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGACCCCTTCCGCTTCGA
R:
CACAGGGGCCAACACAGATTT
Band lengths:
343-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development