MmuINT0071534 @ mm9
Intron Retention
Gene
ENSMUSG00000062464 | Gm9705
Description
predicted gene 9705 [Source:MGI Symbol;Acc:MGI:3780112]
Coordinates
chr17:32771603-32773129:+
Coord C1 exon
chr17:32771603-32771685
Coord A exon
chr17:32771686-32771920
Coord C2 exon
chr17:32771921-32773129
Length
235 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCCATCCTGTCACTCCGCAGGAA
3' ss Score
11.37
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTTGACCCAGAAAACGCACACAAGAGGCCTCCTCTGGCTTTTATTCCCTTTTCTGCCGGGCCCAG
Seq A exon
GTGAGACCAGATGGCTTGTGGTGATGGGTGGATTCTGGGGCTGACAGTGGGAATAGGGTGGAGCTGGGATGGTTGGGTTCTAGTTCTCCTTACCACCCTCTGCTCAGAGAATGTGCAAAAGTCTGCAGAACCCAGGGTTGGAAGTTGAAGGGCTGACCAGGACTGGGTCAGGTTGGGTCCAGGAGCTCCTTTCTAGGCAGAGCTCAGTCAGAGTCCCCATCCTGTCACTCCGCAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCTATGAATGAGATGATGGTGGCACTGGCGTTGACTCTGCTGCGCTTCCGCATCCTGCCGGATGACAAGGAGCCGCGCCGGAAGCCAGAGATAATCCTGCGGGCGGAGGGCGGGTTGTGGCTGCGGGTGGAGCCGCTGAGCACAGTGCTGAAGGACTCCAAACCTGACCTTGAGGCTTCTTTACCCCACCCTCCAATTGTTCTCTCCGGTTCTCAGAATTAGCTTGGCTCCACAGAACGCCAGCAGGGGGCGCTAGAGGGCCACAGAATCAGCCGTGGTCTCTGAAGAGAATGGGTTGGTGTCTTTGAGGCAAAGTACCTGTTTGCTGATTTAGCCCAGCAAGGCTTTCACGCTGAGAGTTCTTTTCCAGTCGAAGCTTGGACTTCATCCTGTTAAAGTCACTGTAGATTTTGGAGCAGATTAGGAGAGGGAGTCGAGTTTCTGGCATGCTTGGCACTCTTTAGTCACTGAAACAAAGCCTAATCGCACTCTTTCCACTTTCTTCTGCCTTCTCTTCCTCTTCGTTATATTTGAAGCGCTCTTCCAGTGTTTTGGCTTCTTAGAGCTGCACTTACAGCAGTGGGCTGCCACAGTACCCCTGGGGGGTGGGGGTGGGGTTGTTTATAAAGTTTGACTAAAATGGTTTCTCAGAAAGGTCTGTCTTGGCACCTTTGAGAAGGATGTTAAATGACATTCTGGGCTTGTGATTCCCAAGGTCCTAAGGCATCTTAAAGTAAACAAAGTCCCAGAATCCTTCATTAACTTATGTCCTGGGTCGTGTTCACTGAGACTCCCACTTAGTTCACAGGAATCTTCTAATTTTCCTTTCTAGTAGCACCTCTGGGCTTTGATCCCTTCACCCTCTCACGAACCCATTAAAAACAGTGTCAGGTGGACGCTGTGACTCAACCCTGAGATCCAGTCCCTGTGACAGGGGGATCGTGAGTTGGAGACTATCTTGGAATACATAGAAAGTCCTGGCAGGCCTTGCCTTCCCCCACTCCCTCCGCCTTGCTAAACTGTTAGACTACATTCCTAAAGCGAGCCACCAAGATCTATTCCCTTACTTGGTCACTTCCTCCTCTTGAGGCTGACTACCAAAGTGCAGCTATCACACTATTGAAGTACAGCAATCAAAAGCCCTCTTTGTTTCCTCTAATTAGCATGTCTAATTAAACACTCCATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062464-Gm9705:NM_001100187:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.136
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=59.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGACCCAGAAAACGCAC
R:
AGAACAATTGGAGGGTGGGGT
Band lengths:
292-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: