BtaINT0007538 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MCD3]
Coordinates
chr7:8467760-8468416:-
Coord C1 exon
chr7:8468334-8468416
Coord A exon
chr7:8467926-8468333
Coord C2 exon
chr7:8467760-8467925
Length
408 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GACCTCACTCCGGCCCACAGGAA
3' ss Score
7.25
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTCGAGCCAGAAAACATCAAGGGGAGGTCACCTCTGGCTTTTATTCCCTTCTCAGTGGGTCCCAG
Seq A exon
GTGAGGGTAGTGGGCATCTGAGGTAGGGATGGGGTGGTGTGTTGGAGGTTCTGGGACTGAGATTCCAGACTTGACTCTCTGGTAGGGGAGTGGGGAAAATGAAGATGGTCAGAGTTTTGGTTCTCCTTCCCTCCCCTCCCCTGGAAGTTATAGGAGTGTTTGGGGAATGATAGTGGGTCCAGAAGGGGTCTACATTGTGCTGGGAGTCCTGTTTCCCTGCCTGCTGGTCTGTGTCCCTGAATGGGTTTTCGGTCAGGCTTAGATATTCAAGCCTATGTGGGGGTCCCAGGCAAGTTTCGTATTCTCTATCACTGTGGGTGGGGGTGGGAGTTGTGAGCTAGATTCTAGGAGCGATGGGGCCTGGATGAAGTTTCCCAGCACAGTCAAAGACCTCACTCCGGCCCACAG
Seq C2 exon
GAACTGCATCGGGCAGACATTTGCCATGACGGAGATGAAGGTGGTCCTGGCGCTCACGCTACTGCGCTTCCGCGTCCTGCCTGGTGAGGAGCCTCGCCGGAAGCCAGAGCTGATCCTGCGAGCGGAGGGCGGACTTTGGCTGCGGGTGGAGCCGCTGAGCGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038549:ENSBTAT00000036364:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.4=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACCCCTTCCGCTTCGAG
R:
CTCCACCCGCAGCCAAAG
Band lengths:
231-639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]