RnoINT0044581 @ rn6
Intron Retention
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14513386-14515212:+
Coord C1 exon
chr7:14513386-14513468
Coord A exon
chr7:14513469-14513883
Coord C2 exon
chr7:14513884-14515212
Length
415 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CATTTGCACCCTTCCTGCAGGAA
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTATACAATCCCTACCGTTTTGACCCAGACATTCCACAGCAGCGCTCCCCGCTGGCCTTTGTGCCTTTCTCAGCAGGTCCCAG
Seq A exon
GTAAGGTCTCTACTAATCGCAAACATCACTACAAATGGGAGGGGCAAAGCCAGATCAGGGGTGTGCCCCATGGAAGCAGGGACCAGGTCACACCCATGAGTAATTTTTGGCAATTTAAGTCCCCTCTGCTGCCCTAACTGAGCCATAAGGTTCCGAATCAGACTGCAATTCCGTCCTTGAGAAAAAGATACCACTCCAGTCTGTCAGACTCTGGGTTCTGGGCTCACATACTTCCAATAGCTTTGTGATGCTGTTACCATTCGGGTTCTACAGAGGAAGGAACTGAAGCTTAGATAAGGGCGGTCAACCGTCAGGACATATTGGTAGTAGTAAGCCGTGTGCTAGGATTTGAACGTTTGACTCTAGGGTTGCACGTCCTAAGGATTCTTGAGTCTCATTTGCACCCTTCCTGCAG
Seq C2 exon
GAACTGCATCGGGCAGAGCTTCGCCATGGCAGAGATGCGAGTGGTCGTGGCGCTGACACTCCTGCGCTTCCGCCTGAGCGTGGACCGAACCCGCAAGGTGCGGAGGAAGCCGGAGCTTATTCTACGCACGGAGAACGGCCTTTGGCTCAACGTGGAGCCGCTACCCTCGCGGGCCGGAGTGCCCCGAGGCCCCACGGAACCTGAGGTTCAGGCTCCGCCCGCTCAGGCCTAGACCACGCCTCCAAAGGCCTGGATCCGCCCCCAAGATATTGAGGACGTTGACTACGCTCCTCGAAAGCACAGGAGGACCAAGCTTTGTAGAGGAGCAGCTTGTTGGTGCTGACTTCGCCCCTCAGGACAAGACCCCATCCTTGGGATTTGGGTCAAAGTTCTGTCTTGAATTACTCCCACCGGCCCTCAGCGTGTGGGGATCATGCTAGGCCCCGCCCCCTCGGGCATGGGCTGCGGGCCCCAGTTTAAATCAGATTACCCTGGCCCTGCGGATTCCCAGGCCCGGCCCACAGAAACTTCCCCGGACCTAAGACTCACCGCTGGGGTTGTATCCTCACTTTCCCACTGGCTATGCCCAGGTTAGCTTCTAAACCGAGGATTTAGAAGCTGGAGCCCGAGGCTGCAGTCCTGAATCACAGCTCCATGGAAGGACTGTTCAAGCTGAACCTCAGGACTTAGGCTGTTTGCTTTGTTGCCGTTTTGTAAACCTAGACCCTTGCAAACCCCTTTCTCCTTGGTTGCGCCGTCCCTTTGCTGAGTTTTCTCAGGTTCAGGAGAGTAAGAGCAAGAGGATCCACACACCTTCTGCCTCACCCTGTCCCAGATGAGGAGACCAAGGTGGGGAGGCGGGCCTCTTGGCGGTCGGGACGCAACTGGGACATAGTTGTTTGATCTGGAACTAAACTCAGATTTTTTTTTTTTTTGGGACAATTTGTGCGCTGTTTATTTGGTCAATAATAATTCAATGTCTACTGGCGTGGGGCCAGGCATATAGCCTAGCCTAGTTCCTCCTTCTCAACAGAGAGGAGCAGAAGTTGAACAATTATACCTGTAAATGATCATTTACAACGTATGACAAATGTTTCAAACATGAGACCCCTGGTTCTGGGTGAATCTGACAGAGGTATCGGGAGCGAAGGATCACGGGAAGTCTGAGGCTGAAGTAAGAGCAGAAGCTGAGTGGACCGTAGGAAGGGAAGAGCATCCCAGGCAGAGGAACAGTGTCAGCAAAGGCCTGGGTTGGGGAAGAGCAGGAAGAGCTCACAGCAGTTTCAGTGTCTGTTAAATGAGATGGATAATCAGTCATCCAAATTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478:ENSRNOT00000007548:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.247
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.9=65.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTACCGTTTTGACCCAGA
R:
AATATCTTGGGGGCGGATCCA
Band lengths:
346-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]