BtaINT0046299 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047933 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr7:8629102-8629940:-
Coord C1 exon
chr7:8629858-8629940
Coord A exon
chr7:8629280-8629857
Coord C2 exon
chr7:8629102-8629279
Length
578 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CCCTGTCCTCCGTCCACCAGGAA
3' ss Score
10.45
Exon sequences
Seq C1 exon
GTGTACAACCCCTATCGCTTTGATCCGGACAACCCACAGCAGCGCTCCCCATTGGCTTACGTGCCCTTTTCTGCAGGACCCAG
Seq A exon
GTAACTTTTATTTCCCCCAATCCAAGTGAAGTGTAGGAGGAACATCAAGGCCAGTGGAAGGTCAGGGATGTGCCTGTTAGGAGCAGAAACCACTGGGGGTGTCCTGTCCACCAACCTGGTACCCTGTTCGTGCCCTCACTACATCAGGAAGCCCCCAAATCAGACCCTACGATATCATCCAGGGTATCAGATATCTACTCTATGCCAAGCTCTGAGTTCTGGGCTCATGTGCTCTTAATGGCTCTATGATGCCTTTGTCCGGGAGTTGAGGCTCCCAGTGTGTGTTAGCCGTTCAGTCATGTCCAACTCTCTGCGACCCCATGCACTGTAGCGCGCCAGGCTCCTCTGTTCATGGGATTCTCCAGGCAAGAGTACTGGAGTGGGTTGCTATGCCCTTCTCCAGGGGAACTTCCTAACCCAGGGATCGAACCCAGGTCTCCCTCATTGCAGGCAGATTCTTTACCGTCTGAGCTACCCGGGAAACCCTGAGGCTCCGAGGGGGAGGTCATTTCACTCCATCCCAGGGACCCCGCTCACACAGCGGCTTAGCCTGAGCCCCCCTGTCCTCCGTCCACCAG
Seq C2 exon
GAACTGCATCGGACAGAGCTTCGCCATGGCTGAGATGCGCGTGGCTGTGGCGCTGACGCTACTGCGTTTCCGCCTGAGCGTGGACCGAACACGCAAGGTGCGGCGGAAGCCCGAGCTCATTCTGCGCACGGAGAACGGCATCTGGCTCAAGGTGGAGCCGCTGCCTCCGCGGGCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047933:ENSBTAT00000066325:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(11.0=85.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTACAACCCCTATCGCTTTGA
R:
CAGCGGCTCCACCTTGAG
Band lengths:
246-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]